Detailed information NTG0247374

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY69_RS17765
• Genome accession: NZ_CP028758
• Coordinates: 3760693..3761685 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A16
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3755693..3766685

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY69_RS17740 (AOY69_18795)	pphB	3757055..3757711 (+)	657	WP_086217893.1	protein-serine/threonine phosphatase	-
AOY69_RS17745 (AOY69_18800)	-	3757752..3757988 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AOY69_RS17750 (AOY69_18805)	-	3757999..3759426 (-)	1428	WP_000863207.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AOY69_RS17755 (AOY69_18810)	-	3759426..3760019 (-)	594	WP_086217892.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AOY69_RS17760 (AOY69_18815)	-	3760166..3760573 (+)	408	WP_086217891.1	MarR family transcriptional regulator	-
AOY69_RS17765 (AOY69_18820)	rpoS	3760693..3761685 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY69_RS17770 (AOY69_18825)	nlpD	3761748..3762836 (-)	1089	WP_237161028.1	murein hydrolase activator NlpD	-
AOY69_RS17775 (AOY69_18830)	pcm	3763027..3763653 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY69_RS17780 (AOY69_18835)	surE	3763647..3764408 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY69_RS17785 (AOY69_18840)	truD	3764389..3765438 (-)	1050	WP_000568926.1	tRNA pseudouridine(13) synthase TruD	-
AOY69_RS17790 (AOY69_18845)	ispF	3765435..3765914 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY69_RS17795 (AOY69_18850)	ispD	3765914..3766624 (-)	711	WP_000246159.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=247374 AOY69_RS17765 WP_000081550.1 3760693..3761685(-) (rpoS) [Escherichia coli strain A16]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=247374 AOY69_RS17765 WP_000081550.1 3760693..3761685(-) (rpoS) [Escherichia coli strain A16]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACTTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715