Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY69_RS17495 Genome accession   NZ_CP028758
Coordinates   3710806..3711321 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain A16     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3705806..3716321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY69_RS17470 (AOY69_18525) ygaZ 3706203..3706940 (+) 738 WP_000445665.1 L-valine exporter subunit YgaZ -
  AOY69_RS17475 (AOY69_18530) ygaH 3706930..3707265 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  AOY69_RS17480 (AOY69_18535) emrR 3707356..3707887 (+) 532 Protein_3414 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AOY69_RS17485 (AOY69_18540) emrA 3708015..3709187 (+) 1173 WP_001400789.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AOY69_RS17490 (AOY69_18545) emrB 3709204..3710742 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY69_RS17495 (AOY69_18550) luxS 3710806..3711321 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AOY69_RS17500 (AOY69_18555) gshA 3711471..3713027 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AOY69_RS17505 (AOY69_18560) yqaA 3713100..3713528 (-) 429 WP_001287454.1 YqaA family protein -
  AOY69_RS17510 (AOY69_18565) yqaB 3713525..3714091 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY69_RS17540 (AOY69_18595) csrA 3715414..3715599 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=247371 AOY69_RS17495 WP_001130211.1 3710806..3711321(-) (luxS) [Escherichia coli strain A16]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=247371 AOY69_RS17495 WP_001130211.1 3710806..3711321(-) (luxS) [Escherichia coli strain A16]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731