Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   FORC72_RS22680 Genome accession   NZ_CP023473
Coordinates   1060522..1061703 (+) Length   393 a.a.
NCBI ID   WP_120459483.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_072     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1055522..1066703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC72_RS22670 (FORC72_4007) - 1057654..1058508 (+) 855 WP_120459482.1 LysR family transcriptional regulator -
  FORC72_RS22675 (FORC72_4008) ylqF 1059223..1060167 (+) 945 WP_017448150.1 ribosome biogenesis GTPase YlqF -
  FORC72_RS22680 (FORC72_4009) cqsA 1060522..1061703 (+) 1182 WP_120459483.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  FORC72_RS22685 (FORC72_4010) cqsS 1061781..1063829 (-) 2049 WP_120459484.1 hybrid sensor histidine kinase/response regulator Regulator
  FORC72_RS22690 (FORC72_4011) - 1064149..1064445 (+) 297 Protein_929 HAD family phosphatase -
  FORC72_RS22695 (FORC72_4012) - 1064714..1064878 (+) 165 Protein_930 helix-turn-helix domain-containing protein -
  FORC72_RS22700 - 1065166..1066042 (+) 877 Protein_931 IS481 family transposase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43737.02 Da        Isoelectric Point: 6.6123

>NTDB_id=247364 FORC72_RS22680 WP_120459483.1 1060522..1061703(+) (cqsA) [Vibrio parahaemolyticus strain FORC_072]
MCTKNETKQLPSSIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPEGSGLLQKLGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERGVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=247364 FORC72_RS22680 WP_120459483.1 1060522..1061703(+) (cqsA) [Vibrio parahaemolyticus strain FORC_072]
ATGTGTACTAAAAACGAAACTAAACAACTGCCCTCTTCTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCAGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGCACAATCGC
CCCTTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAGAGGGGTCTGGATTATTACAAAAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCAATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGGCGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.594

97.71

0.573

Multiple sequence alignment