Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AOY69_RS13885 Genome accession   NZ_CP028758
Coordinates   2940709..2942136 (+) Length   475 a.a.
NCBI ID   WP_119458040.1    Uniprot ID   -
Organism   Escherichia coli strain A16     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2935709..2947136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY69_RS13855 (AOY69_14725) cobU 2935980..2936525 (-) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  AOY69_RS13860 (AOY69_14730) - 2936749..2936883 (+) 135 WP_062883456.1 EutP/PduV family microcompartment system protein -
  AOY69_RS13865 (AOY69_14735) tmaR 2936984..2937313 (-) 330 WP_000450409.1 DUF496 family protein -
  AOY69_RS13870 (AOY69_14740) yeeA 2937485..2938543 (-) 1059 WP_001200891.1 FUSC family protein -
  AOY69_RS13875 (AOY69_14745) sbmC 2938742..2939215 (-) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  AOY69_RS13880 (AOY69_14750) dacD 2939334..2940500 (-) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AOY69_RS13885 (AOY69_14755) sbcB 2940709..2942136 (+) 1428 WP_119458040.1 exodeoxyribonuclease I Machinery gene
  AOY69_RS13890 (AOY69_14760) tsuB 2942179..2942406 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AOY69_RS13895 (AOY69_14765) tsuA 2942420..2943478 (-) 1059 WP_024245909.1 thiosulfate utilization transporter TsuA/YeeE -
  AOY69_RS13900 (AOY69_14770) plaP 2943657..2945015 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AOY69_RS13905 (AOY69_14775) yoeI 2945005..2945067 (-) 63 WP_010723108.1 membrane protein YoeI -
  AOY69_RS13910 (AOY69_14780) yeeY 2945282..2946211 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  AOY69_RS13915 (AOY69_14785) yeeZ 2946257..2947081 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.78 Da        Isoelectric Point: 5.6086

>NTDB_id=247362 AOY69_RS13885 WP_119458040.1 2940709..2942136(+) (sbcB) [Escherichia coli strain A16]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRSKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGNNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=247362 AOY69_RS13885 WP_119458040.1 2940709..2942136(+) (sbcB) [Escherichia coli strain A16]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAGTA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCAATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment