Detailed information NTG0247354

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: FORC72_RS15980
• Genome accession: NZ_CP023472
• Coordinates: 3083960..3084967 (+)
• Length: 335 a.a.
• NCBI ID: WP_120459138.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_072
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3078960..3089967

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC72_RS15955 (FORC72_2783)	rplC	3079494..3080123 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
FORC72_RS15960 (FORC72_2784)	rpsJ	3080138..3080449 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
FORC72_RS15965 (FORC72_2785)	rpmE	3080907..3081128 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
FORC72_RS15975 (FORC72_2786)	priA	3081423..3083627 (+)	2205	WP_120459137.1	primosomal protein N'	-
FORC72_RS15980 (FORC72_2787)	cytR	3083960..3084967 (+)	1008	WP_120459138.1	DNA-binding transcriptional regulator CytR	Regulator
FORC72_RS15985 (FORC72_2788)	ftsN	3085144..3085689 (+)	546	WP_065765673.1	cell division protein FtsN	-
FORC72_RS15990 (FORC72_2789)	hslV	3085853..3086404 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
FORC72_RS15995 (FORC72_2790)	hslU	3086428..3087759 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
FORC72_RS16000 (FORC72_2791)	-	3087944..3088861 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
FORC72_RS16005 (FORC72_2792)	rraA	3088938..3089450 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
FORC72_RS16010 (FORC72_2793)	zapB	3089555..3089797 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36850.32 Da
• Isoelectric Point: 6.4938

>NTDB_id=247354 FORC72_RS15980 WP_120459138.1 3083960..3084967(+) (cytR) [Vibrio parahaemolyticus strain FORC_072]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGQRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=247354 FORC72_RS15980 WP_120459138.1 3083960..3084967(+) (cytR) [Vibrio parahaemolyticus strain FORC_072]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAGGCGGTCAATTACCTAACTCAGCTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTGTTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGCTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCAGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCCTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	99.701	100	0.997
cytR	Vibrio cholerae C6706	90.419	99.701	0.901