Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   SAK_RS02770 Genome accession   NC_007432
Coordinates   498010..499083 (+) Length   357 a.a.
NCBI ID   WP_000790655.1    Uniprot ID   -
Organism   Streptococcus agalactiae A909     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 493010..504083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAK_RS02740 (SAK_0551) - 493900..494964 (+) 1065 WP_000021297.1 MmcQ/YjbR family DNA-binding protein -
  SAK_RS02745 (SAK_0552) asnA 495079..496071 (+) 993 WP_000748011.1 aspartate--ammonia ligase -
  SAK_RS02750 (SAK_0553) - 496116..496565 (-) 450 WP_000592260.1 thiol reductase thioredoxin -
  SAK_RS02755 (SAK_0554) rsmD 496697..497236 (+) 540 WP_001266830.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SAK_RS02760 - 497248..497538 (+) 291 WP_000384890.1 hypothetical protein -
  SAK_RS02765 (SAK_0555) coaD 497535..498020 (+) 486 WP_000161892.1 pantetheine-phosphate adenylyltransferase -
  SAK_RS02770 (SAK_0556) sepM 498010..499083 (+) 1074 WP_000790655.1 SepM family pheromone-processing serine protease Regulator
  SAK_RS02775 (SAK_0557) - 499158..500492 (+) 1335 WP_000137521.1 bifunctional metallophosphatase/5'-nucleotidase -
  SAK_RS02780 (SAK_0558) - 500561..501139 (+) 579 WP_001224500.1 YutD family protein -
  SAK_RS02785 (SAK_0559) rlmN 501190..502296 (+) 1107 WP_001124995.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SAK_RS02790 (SAK_0560) - 502296..502811 (+) 516 WP_000919803.1 VanZ family protein -

Sequence


Protein


Download         Length: 357 a.a.        Molecular weight: 39130.32 Da        Isoelectric Point: 10.4619

>NTDB_id=24735 SAK_RS02770 WP_000790655.1 498010..499083(+) (sepM) [Streptococcus agalactiae A909]
MKNKDPKRKHKSLLGLLKWWIIGFAFLLLVLASLVVRLPYYLEMPGGAYDIRSVLKVNKKADKAKGSYNFVAVSVSQATP
AQVLYAWLTPFTELSSKEETTGGFSNDDYLRINQFYMETSQNESVYQALKLANKQVSLTYKGVYVLNLAKNSTFKDRLHL
ADTVTGVNGKSFKNSSQLIKYVAALHLGDKVKVQYTSQGKKKESVGKVIKLSNGKNGIGIGLTDHTEVSSNVPVDFNTEG
VGGPSAGLMFTLAIYDQLVKEDLRKGRKIAGTGTIEQNGHVGDIGGAGLKVVSAAKKGMDIFFVPNNPIDKNAKKGKTKV
QTNYQEAKAAAKRLGTKMKIVPVQNVQQAIDYLKKTK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=24735 SAK_RS02770 WP_000790655.1 498010..499083(+) (sepM) [Streptococcus agalactiae A909]
GTGAAGAATAAAGATCCAAAAAGAAAACATAAAAGTTTACTAGGTCTGCTTAAATGGTGGATTATAGGTTTTGCTTTTTT
ATTGTTAGTATTAGCAAGCCTTGTGGTGAGACTACCTTATTATTTGGAAATGCCAGGTGGAGCTTATGATATCCGTTCGG
TATTGAAAGTGAATAAAAAGGCTGATAAAGCTAAGGGTTCGTACAATTTTGTAGCGGTATCTGTTAGTCAAGCAACGCCA
GCTCAGGTTCTTTATGCTTGGTTAACTCCTTTTACAGAATTATCTAGTAAAGAGGAGACAACAGGTGGCTTTAGTAATGA
CGATTATCTCAGAATTAATCAATTCTACATGGAGACTTCTCAAAATGAGTCCGTCTATCAAGCTTTAAAGTTAGCTAATA
AGCAAGTATCTCTTACTTATAAAGGAGTTTATGTGCTTAACTTAGCTAAAAATTCGACATTTAAAGATAGATTACATTTA
GCTGATACAGTCACAGGAGTTAATGGCAAAAGTTTCAAAAATTCTTCTCAACTTATCAAATATGTTGCAGCTCTTCATCT
AGGTGATAAAGTAAAGGTACAATACACAAGTCAAGGTAAAAAGAAAGAATCAGTTGGTAAAGTTATTAAACTATCAAACG
GTAAAAATGGTATTGGTATCGGTTTGACAGACCATACAGAAGTATCATCTAATGTTCCTGTGGACTTTAATACTGAAGGT
GTTGGAGGACCAAGTGCAGGTTTAATGTTTACTTTAGCGATTTACGACCAATTGGTTAAAGAAGATTTACGTAAAGGACG
TAAGATTGCAGGCACTGGTACTATTGAGCAAAATGGGCATGTTGGCGATATTGGTGGAGCAGGTTTGAAAGTTGTTTCAG
CGGCTAAAAAAGGAATGGATATTTTCTTTGTTCCTAATAATCCGATCGATAAAAATGCTAAAAAAGGCAAAACAAAGGTT
CAGACGAATTATCAAGAGGCAAAAGCAGCAGCTAAGCGATTAGGTACGAAGATGAAAATTGTACCAGTTCAAAATGTTCA
GCAAGCTATTGATTATTTGAAAAAAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

68.732

94.958

0.653


Multiple sequence alignment