Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY69_RS06045 Genome accession   NZ_CP028758
Coordinates   1304758..1305363 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain A16     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1299758..1310363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY69_RS23235 - 1300312..1300410 (+) 99 Protein_1163 hypothetical protein -
  AOY69_RS06015 (AOY69_06395) rsmS 1300463..1300624 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  AOY69_RS06020 (AOY69_06400) priC 1300638..1301165 (-) 528 WP_001624741.1 primosomal replication protein N'' -
  AOY69_RS06025 (AOY69_06405) ybaN 1301235..1301612 (+) 378 WP_001188905.1 DUF454 family protein -
  AOY69_RS06030 (AOY69_06415) apt 1301765..1302316 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY69_RS06035 (AOY69_06420) dnaX 1302445..1304376 (+) 1932 WP_000122043.1 DNA polymerase III subunit gamma/tau -
  AOY69_RS06040 (AOY69_06425) ybaB 1304429..1304758 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY69_RS06045 (AOY69_06430) recR 1304758..1305363 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AOY69_RS06050 (AOY69_06435) htpG 1305473..1307347 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  AOY69_RS06055 (AOY69_06445) adk 1307528..1308172 (+) 645 WP_001220233.1 adenylate kinase -
  AOY69_RS06060 (AOY69_06450) hemH 1308304..1309266 (+) 963 WP_097480156.1 ferrochelatase -
  AOY69_RS06065 (AOY69_06455) aes 1309263..1310222 (-) 960 WP_000801812.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=247343 AOY69_RS06045 WP_001195025.1 1304758..1305363(+) (recR) [Escherichia coli strain A16]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=247343 AOY69_RS06045 WP_001195025.1 1304758..1305363(+) (recR) [Escherichia coli strain A16]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443