Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   COO54_RS10030 Genome accession   NZ_CP023468
Coordinates   1970044..1970649 (-) Length   201 a.a.
NCBI ID   WP_117338566.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica strain BAA-1586     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1965044..1975649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COO54_RS10015 (COO54_10020) helD 1965261..1967315 (-) 2055 WP_023220325.1 DNA helicase IV -
  COO54_RS10020 (COO54_10025) - 1967439..1967885 (+) 447 WP_001261222.1 YccF domain-containing protein -
  COO54_RS10025 (COO54_10030) yccS 1967904..1970057 (+) 2154 WP_117338565.1 YccS family putative transporter -
  COO54_RS10030 (COO54_10035) sxy/tfoX 1970044..1970649 (-) 606 WP_117338566.1 TfoX/Sxy family DNA transformation protein Regulator
  COO54_RS10035 (COO54_10040) sulA 1970866..1971375 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  COO54_RS10040 (COO54_10045) ompA 1971732..1972784 (+) 1053 WP_001562588.1 porin OmpA -
  COO54_RS10045 (COO54_10050) matP 1972856..1973308 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  COO54_RS10050 (COO54_10055) - 1973494..1975254 (+) 1761 WP_000156458.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.00 Da        Isoelectric Point: 9.2415

>NTDB_id=247303 COO54_RS10030 WP_117338566.1 1970044..1970649(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain BAA-1586]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKKKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=247303 COO54_RS10030 WP_117338566.1 1970044..1970649(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain BAA-1586]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGAAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACAGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746

Multiple sequence alignment