Detailed information NTG0247295

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY70_RS17925
• Genome accession: NZ_CP028757
• Coordinates: 3713850..3714842 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A17
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3708850..3719842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY70_RS17900 (AOY70_19035)	ygbN	3709505..3710869 (+)	1365	WP_000104439.1	GntP family transporter	-
AOY70_RS17905 (AOY70_19040)	-	3710908..3711144 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AOY70_RS17910 (AOY70_19045)	-	3711155..3712582 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AOY70_RS17915 (AOY70_19050)	-	3712582..3713175 (-)	594	WP_039022715.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AOY70_RS17920 (AOY70_19055)	-	3713322..3713729 (+)	408	WP_001208072.1	MarR family transcriptional regulator	-
AOY70_RS17925 (AOY70_19060)	rpoS	3713850..3714842 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY70_RS17930 (AOY70_19065)	nlpD	3714905..3715999 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AOY70_RS17935 (AOY70_19070)	pcm	3716184..3716810 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY70_RS17940 (AOY70_19075)	surE	3716804..3717565 (-)	762	WP_001472109.1	5'/3'-nucleotidase SurE	-
AOY70_RS17945 (AOY70_19080)	truD	3717546..3718595 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AOY70_RS17950 (AOY70_19085)	ispF	3718592..3719071 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY70_RS17955 (AOY70_19090)	ispD	3719071..3719781 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=247295 AOY70_RS17925 WP_000081550.1 3713850..3714842(-) (rpoS) [Escherichia coli strain A17]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=247295 AOY70_RS17925 WP_000081550.1 3713850..3714842(-) (rpoS) [Escherichia coli strain A17]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715