Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY70_RS17630 Genome accession   NZ_CP028757
Coordinates   3658485..3659000 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain A17     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3653485..3664000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY70_RS17605 (AOY70_18745) ygaZ 3653884..3654621 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AOY70_RS17610 (AOY70_18750) ygaH 3654611..3654946 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AOY70_RS17615 (AOY70_18755) emrR 3655037..3655567 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AOY70_RS17620 (AOY70_18760) emrA 3655694..3656866 (+) 1173 WP_097765101.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AOY70_RS17625 (AOY70_18765) emrB 3656883..3658421 (+) 1539 WP_201476929.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY70_RS17630 (AOY70_18770) luxS 3658485..3659000 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  AOY70_RS17635 (AOY70_18775) gshA 3659150..3660706 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AOY70_RS17640 (AOY70_18780) yqaA 3660779..3661207 (-) 429 WP_001287454.1 YqaA family protein -
  AOY70_RS17645 (AOY70_18785) yqaB 3661204..3661770 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY70_RS17675 (AOY70_18815) csrA 3663092..3663277 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=247292 AOY70_RS17630 WP_001130210.1 3658485..3659000(-) (luxS) [Escherichia coli strain A17]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=247292 AOY70_RS17630 WP_001130210.1 3658485..3659000(-) (luxS) [Escherichia coli strain A17]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737