Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CNN82_RS02130 Genome accession   NZ_CP023466
Coordinates   451310..451714 (+) Length   134 a.a.
NCBI ID   WP_007897954.1    Uniprot ID   -
Organism   Pseudomonas frederiksbergensis strain KNU-15     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 446310..456714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNN82_RS02100 (CNN82_02100) - 446378..447382 (-) 1005 WP_007939362.1 aspartate carbamoyltransferase catalytic subunit -
  CNN82_RS02105 (CNN82_02105) pyrR 447410..447913 (-) 504 WP_019580619.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  CNN82_RS02110 (CNN82_02110) ruvX 448012..448458 (-) 447 WP_019580620.1 Holliday junction resolvase RuvX -
  CNN82_RS02115 (CNN82_02115) - 448458..449030 (-) 573 WP_007939365.1 YqgE/AlgH family protein -
  CNN82_RS02120 (CNN82_02120) - 449158..450057 (-) 900 WP_026331823.1 energy transducer TonB -
  CNN82_RS02125 (CNN82_02125) gshB 450135..451088 (-) 954 WP_019580622.1 glutathione synthase -
  CNN82_RS02130 (CNN82_02130) pilG 451310..451714 (+) 405 WP_007897954.1 twitching motility response regulator PilG Regulator
  CNN82_RS02135 (CNN82_02135) pilH 451772..452137 (+) 366 WP_019580623.1 twitching motility response regulator PilH -
  CNN82_RS02140 (CNN82_02140) - 452148..452702 (+) 555 WP_019650233.1 chemotaxis protein CheW -
  CNN82_RS02145 (CNN82_02145) - 452743..454800 (+) 2058 WP_018928717.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14619.98 Da        Isoelectric Point: 7.2443

>NTDB_id=247254 CNN82_RS02130 WP_007897954.1 451310..451714(+) (pilG) [Pseudomonas frederiksbergensis strain KNU-15]
MEQHSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIQAHVPGFAVVSPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=247254 CNN82_RS02130 WP_007897954.1 451310..451714(+) (pilG) [Pseudomonas frederiksbergensis strain KNU-15]
ATGGAACAGCATTCCAGCGCCTTGAAGGTCATGGTGATCGATGATTCGAAAACGATTCGTCGCACCGCCGAAACGCTGTT
GAAAAACGTGGGCTGTGAAGTCATCACCGCAATCGATGGTTTCGATGCCCTGGCCAAGATTGCCGACAATCACCCAGGCA
TCATCTTTGTCGACATCATGATGCCGCGTCTGGATGGCTATCAGACCTGCGCGTTGATCAAGAACAACAGTGCGTTCAAG
TCCACGCCAGTGATTATGCTGTCGTCCAGGGACGGGTTGTTCGACAAGGCCAAGGGGCGGATCGTCGGCTCCGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAACGCGATTCAGGCCCACGTACCGGGCTTTGCTGTCGTTTCGCCGC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

93.284

0.701

Multiple sequence alignment