Detailed information NTG0247181

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY72_RS05540
• Genome accession: NZ_CP028756
• Coordinates: 1152553..1153545 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A19
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1147553..1158545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY72_RS05510 (AOY72_05915)	ispD	1147614..1148324 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY72_RS05515 (AOY72_05920)	ispF	1148324..1148803 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY72_RS05520 (AOY72_05925)	truD	1148800..1149849 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AOY72_RS05525 (AOY72_05930)	surE	1149830..1150591 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY72_RS05530 (AOY72_05935)	pcm	1150585..1151211 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY72_RS05535 (AOY72_05940)	nlpD	1151396..1152490 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AOY72_RS05540 (AOY72_05945)	rpoS	1152553..1153545 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY72_RS05545 (AOY72_05950)	-	1153666..1154073 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
AOY72_RS05550 (AOY72_05955)	-	1154220..1154813 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AOY72_RS05555 (AOY72_05960)	-	1154813..1156239 (+)	1427	Protein_1094	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AOY72_RS05560 (AOY72_05965)	-	1156250..1156486 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AOY72_RS05565 (AOY72_05970)	ygbN	1156525..1157889 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=247181 AOY72_RS05540 WP_000081550.1 1152553..1153545(+) (rpoS) [Escherichia coli strain A19]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=247181 AOY72_RS05540 WP_000081550.1 1152553..1153545(+) (rpoS) [Escherichia coli strain A19]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715