Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CCZ27_RS09830 Genome accession   NZ_CP023439
Coordinates   2267622..2268992 (-) Length   456 a.a.
NCBI ID   WP_096447751.1    Uniprot ID   -
Organism   Thauera sp. K11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2262622..2273992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ27_RS09815 (CCZ27_09815) - 2263425..2264924 (+) 1500 WP_096447744.1 nucleobase:cation symporter-2 family protein -
  CCZ27_RS09820 (CCZ27_09820) - 2264956..2265843 (+) 888 WP_096447747.1 hypothetical protein -
  CCZ27_RS09825 (CCZ27_09825) - 2266051..2267496 (-) 1446 WP_096447749.1 NYN domain-containing protein -
  CCZ27_RS09830 (CCZ27_09830) radA 2267622..2268992 (-) 1371 WP_096447751.1 DNA repair protein RadA Machinery gene
  CCZ27_RS09835 (CCZ27_09835) - 2268992..2269912 (-) 921 WP_096447753.1 LysR family transcriptional regulator -
  CCZ27_RS09840 (CCZ27_09840) lplT 2270067..2271317 (+) 1251 WP_096447755.1 lysophospholipid transporter LplT -
  CCZ27_RS09845 (CCZ27_09845) - 2271374..2272288 (-) 915 WP_232516621.1 uracil-DNA glycosylase -
  CCZ27_RS09850 (CCZ27_09850) rimI 2272330..2272752 (-) 423 WP_096452387.1 ribosomal protein S18-alanine N-acetyltransferase -
  CCZ27_RS09855 (CCZ27_09855) tsaB 2272791..2273483 (-) 693 WP_096447757.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  CCZ27_RS09860 (CCZ27_09860) - 2273538..2273966 (-) 429 WP_157748534.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48574.71 Da        Isoelectric Point: 7.6502

>NTDB_id=247163 CCZ27_RS09830 WP_096447751.1 2267622..2268992(-) (radA) [Thauera sp. K11]
MAKPRTAYICTECGAQLGRWQGQCPQCQGWNTLVEGVVEQAPAGGGRFAAIAGQTSRLQPLSSLQPREEPRQPTGLDEFD
RVLGGGLVGGGVVLIGGDPGIGKSTLLLQALSNLAGSQSAVYVSGEESGEQVALRAQRLQLPASPLQMLAEINLERILDV
LRDSRPRVAVIDSIQTVYSEALQSAPGSVAQVRECAAQLTRFAKQSGTSLIIVGHVTKDGTLAGPRVLEHIVDTVLYFEG
DTHSSFRLIRAFKNRFGAVNELGVFAMTERGLRGVSNPSAIFLSQHGQQVPGSCVLVTQEGTRPLLVEIQALVDAAHSPN
PRRLSVGLEQTRLAMLLAVLHRHAGIACFDQDVFVNAVGGVKIAEPAADLAILFAIVSSLRSRALRRGLAVFGEVGLAGE
IRPAPRGQDRLKEAGKLGFDVAIVPKANAPRQAPEGMRVIAVDRIEQALEQLRDLE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=247163 CCZ27_RS09830 WP_096447751.1 2267622..2268992(-) (radA) [Thauera sp. K11]
ATGGCGAAGCCCAGGACGGCCTACATCTGCACCGAATGCGGTGCGCAGCTCGGCCGCTGGCAGGGGCAGTGCCCGCAGTG
CCAGGGCTGGAACACGCTGGTGGAAGGTGTCGTCGAGCAGGCGCCGGCGGGCGGCGGGCGCTTTGCCGCGATCGCCGGGC
AGACCAGCCGCCTGCAGCCCTTGTCTTCCCTGCAGCCGCGGGAGGAACCGCGCCAGCCCACCGGGCTCGACGAATTCGAC
CGCGTGCTGGGCGGCGGCCTGGTCGGCGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCCACGCTGCT
GCTGCAGGCCCTGTCGAACCTGGCGGGCAGCCAGAGCGCGGTGTATGTCAGCGGCGAAGAGTCGGGCGAGCAGGTGGCAT
TGCGGGCGCAGCGGCTGCAGCTCCCGGCGTCGCCGCTGCAGATGCTGGCCGAGATCAACCTGGAGCGCATCCTCGACGTG
CTGCGCGACAGCCGCCCGCGCGTGGCGGTGATCGACTCGATCCAGACGGTGTATTCCGAGGCGCTGCAGTCGGCGCCCGG
CTCGGTGGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACCCGCTTCGCCAAGCAGAGCGGCACCAGCCTCATCATCGTCG
GCCACGTCACCAAGGACGGTACGCTGGCCGGGCCCCGCGTGCTGGAGCACATCGTCGACACGGTGCTGTATTTCGAAGGC
GACACCCACTCCAGCTTCCGGCTGATCCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAATGAACTGGGCGTGTTCGCGAT
GACCGAGCGCGGCCTGCGCGGCGTTTCCAACCCCTCGGCCATCTTCCTGTCGCAGCATGGGCAGCAGGTGCCCGGCAGTT
GCGTGCTGGTCACGCAGGAAGGGACGCGCCCGCTGCTGGTCGAGATCCAGGCCCTGGTCGATGCCGCCCACAGCCCCAAT
CCGCGGCGGCTGTCGGTCGGCCTGGAGCAGACGCGCCTGGCGATGCTGCTCGCGGTGCTGCACCGGCACGCCGGCATCGC
CTGTTTCGACCAGGATGTGTTCGTGAACGCGGTCGGCGGAGTGAAAATCGCCGAGCCCGCCGCCGATCTGGCCATCCTGT
TCGCCATCGTGTCGTCGCTGCGCAGCCGGGCGCTGCGGCGCGGCCTGGCGGTGTTCGGTGAAGTGGGCCTGGCCGGCGAG
ATCCGCCCGGCGCCGCGCGGCCAGGACAGGCTGAAGGAGGCGGGCAAGCTCGGCTTCGACGTCGCCATCGTTCCCAAGGC
CAATGCGCCCCGGCAGGCGCCCGAAGGGATGCGGGTGATCGCGGTCGATCGCATCGAGCAGGCGCTGGAGCAACTGCGCG
ACCTGGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-451)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.339

99.561

0.491
  radA Streptococcus mitis NCTC 12261

43.488

99.342

0.432
  radA Streptococcus pneumoniae Rx1

43.488

99.342

0.432
  radA Streptococcus pneumoniae D39

43.488

99.342

0.432
  radA Streptococcus pneumoniae R6

43.488

99.342

0.432
  radA Streptococcus pneumoniae TIGR4

43.488

99.342

0.432
  radA Streptococcus mitis SK321

43.488

99.342

0.432

Multiple sequence alignment