Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY73_RS17395 Genome accession   NZ_CP028755
Coordinates   3582818..3583423 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain A20     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3577818..3588423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY73_RS17375 (AOY73_18470) aes 3577972..3578940 (+) 969 WP_000801820.1 acetyl esterase -
  AOY73_RS17380 (AOY73_18475) hemH 3578915..3579877 (-) 963 WP_001250116.1 ferrochelatase -
  AOY73_RS17385 (AOY73_18480) adk 3580009..3580653 (-) 645 WP_001313630.1 adenylate kinase -
  AOY73_RS17390 (AOY73_18490) htpG 3580834..3582708 (-) 1875 WP_096980060.1 molecular chaperone HtpG -
  AOY73_RS17395 (AOY73_18495) recR 3582818..3583423 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AOY73_RS17400 (AOY73_18500) ybaB 3583423..3583752 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY73_RS17405 (AOY73_18505) dnaX 3583805..3585736 (-) 1932 WP_000122032.1 DNA polymerase III subunit gamma/tau -
  AOY73_RS17410 (AOY73_18510) apt 3585865..3586416 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY73_RS17415 (AOY73_18520) ybaN 3586569..3586946 (-) 378 WP_001188900.1 DUF454 family protein -
  AOY73_RS17420 (AOY73_18525) priC 3587016..3587543 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  AOY73_RS17425 (AOY73_18530) rsmS 3587557..3587718 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY73_RS24200 - 3587771..3587869 (-) 99 Protein_3425 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=247129 AOY73_RS17395 WP_001195025.1 3582818..3583423(-) (recR) [Escherichia coli strain A20]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=247129 AOY73_RS17395 WP_001195025.1 3582818..3583423(-) (recR) [Escherichia coli strain A20]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443