Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AOY73_RS09255 Genome accession   NZ_CP028755
Coordinates   1964004..1965431 (-) Length   475 a.a.
NCBI ID   WP_096980440.1    Uniprot ID   -
Organism   Escherichia coli strain A20     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1959004..1970431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY73_RS09220 (AOY73_09800) hisL 1959588..1959638 (-) 51 WP_001364200.1 his operon leader peptide -
  AOY73_RS09225 (AOY73_09805) yefM 1959921..1960172 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  AOY73_RS09230 (AOY73_09810) yoeB 1960169..1960423 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  AOY73_RS09235 (AOY73_09815) yeeZ 1960506..1961330 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  AOY73_RS09240 (AOY73_09820) yeeY 1961376..1962305 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  AOY73_RS09245 (AOY73_09825) yoeI 1962520..1962582 (+) 63 WP_010723108.1 membrane protein YoeI -
  AOY73_RS09250 (AOY73_09830) plaP 1962572..1963930 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AOY73_RS09255 (AOY73_09835) sbcB 1964004..1965431 (-) 1428 WP_096980440.1 exodeoxyribonuclease I Machinery gene
  AOY73_RS09260 (AOY73_09840) dacD 1965640..1966806 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AOY73_RS09265 (AOY73_09845) - 1966972..1968192 (+) 1221 WP_096980620.1 ISL3 family transposase -
  AOY73_RS09270 (AOY73_09850) sbmC 1968249..1968722 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  AOY73_RS09275 (AOY73_09855) yeeA 1968920..1969978 (+) 1059 WP_089646428.1 FUSC family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54517.80 Da        Isoelectric Point: 5.4720

>NTDB_id=247112 AOY73_RS09255 WP_096980440.1 1964004..1965431(-) (sbcB) [Escherichia coli strain A20]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSFFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTTWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=247112 AOY73_RS09255 WP_096980440.1 1964004..1965431(-) (sbcB) [Escherichia coli strain A20]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGTTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCACCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGATAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581