Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CLI98_RS16990 Genome accession   NZ_CP023431
Coordinates   3294615..3294899 (+) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis strain SCGB 574     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3289615..3299899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI98_RS16965 (CLI98_03342) - 3290859..3291767 (+) 909 WP_022553408.1 ketopantoate reductase family protein -
  CLI98_RS16970 (CLI98_03343) - 3291798..3293030 (-) 1233 WP_007409644.1 aminopeptidase -
  CLI98_RS16975 (CLI98_03344) - 3293131..3293265 (-) 135 WP_003154559.1 protein YkpC -
  CLI98_RS16980 (CLI98_03345) mreBH 3293337..3294344 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  CLI98_RS16990 (CLI98_03346) abrB 3294615..3294899 (+) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CLI98_RS16995 (CLI98_03347) - 3295072..3296376 (+) 1305 WP_014417634.1 ATP-binding protein -
  CLI98_RS17000 (CLI98_03348) - 3296378..3297205 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase family protein -
  CLI98_RS17005 (CLI98_03349) ktrC 3297246..3297911 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  CLI98_RS17010 (CLI98_03350) ade 3298060..3299793 (+) 1734 WP_022553404.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=247104 CLI98_RS16990 WP_014417633.1 3294615..3294899(+) (abrB) [Bacillus velezensis strain SCGB 574]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=247104 CLI98_RS16990 WP_014417633.1 3294615..3294899(+) (abrB) [Bacillus velezensis strain SCGB 574]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment