Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CLI98_RS16875 Genome accession   NZ_CP023431
Coordinates   3274118..3274714 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCGB 574     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3269118..3279714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI98_RS16845 (CLI98_03318) - 3269332..3269787 (+) 456 WP_014417614.1 flavodoxin -
  CLI98_RS16850 (CLI98_03319) dapD 3269869..3270579 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  CLI98_RS16855 (CLI98_03320) - 3270650..3271774 (+) 1125 WP_017417680.1 N-acetyldiaminopimelate deacetylase -
  CLI98_RS16860 (CLI98_03321) - 3271835..3272080 (+) 246 WP_003154596.1 YkuS family protein -
  CLI98_RS16865 (CLI98_03322) - 3272114..3272920 (-) 807 WP_021493755.1 mechanosensitive ion channel family protein -
  CLI98_RS16870 (CLI98_03323) - 3273208..3273666 (+) 459 WP_014417617.1 TlpA disulfide reductase family protein -
  CLI98_RS16875 (CLI98_03324) rok 3274118..3274714 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  CLI98_RS16880 (CLI98_03325) - 3274735..3275727 (-) 993 WP_021493753.1 hypothetical protein -
  CLI98_RS16885 (CLI98_03326) - 3275873..3276475 (+) 603 WP_014417620.1 molybdenum cofactor guanylyltransferase -
  CLI98_RS16890 (CLI98_03327) - 3276527..3277546 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  CLI98_RS16895 (CLI98_03328) glp 3277564..3278856 (+) 1293 WP_022553413.1 gephyrin-like molybdotransferase Glp -
  CLI98_RS16900 (CLI98_03329) mobB 3278817..3279338 (+) 522 WP_029973679.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=247103 CLI98_RS16875 WP_003154591.1 3274118..3274714(+) (rok) [Bacillus velezensis strain SCGB 574]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=247103 CLI98_RS16875 WP_003154591.1 3274118..3274714(+) (rok) [Bacillus velezensis strain SCGB 574]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTAAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCGGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment