Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY73_RS06150 Genome accession   NZ_CP028755
Coordinates   1269700..1270215 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain A20     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1264700..1275215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY73_RS06115 (AOY73_06485) csrA 1265836..1266021 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AOY73_RS06135 (AOY73_06505) yqaB 1266930..1267496 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY73_RS06140 (AOY73_06510) yqaA 1267493..1267921 (+) 429 WP_001287462.1 YqaA family protein -
  AOY73_RS06145 (AOY73_06515) gshA 1267994..1269550 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AOY73_RS06150 (AOY73_06520) luxS 1269700..1270215 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  AOY73_RS06155 (AOY73_06525) emrB 1270279..1271817 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY73_RS06160 (AOY73_06530) emrA 1271834..1273006 (-) 1173 WP_096980114.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AOY73_RS06165 (AOY73_06535) emrR 1273133..1273663 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AOY73_RS06170 (AOY73_06540) ygaH 1273754..1274089 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  AOY73_RS06175 (AOY73_06545) ygaZ 1274079..1274816 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=247102 AOY73_RS06150 WP_001130208.1 1269700..1270215(+) (luxS) [Escherichia coli strain A20]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=247102 AOY73_RS06150 WP_001130208.1 1269700..1270215(+) (luxS) [Escherichia coli strain A20]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCATTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment