Detailed information NTG0024709

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AVA_RS24645
• Genome accession: NC_007413
• Coordinates: 6120224..6121852 (+)
• Length: 542 a.a.
• NCBI ID: WP_041456500.1
• Uniprot ID: -
• Organism: Trichormus variabilis ATCC 29413
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6115224..6126852

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVA_RS24635 (Ava_4855)	-	6116894..6118924 (+)	2031	WP_011321513.1	serine/threonine-protein kinase	-
AVA_RS24640 (Ava_4856)	-	6118941..6120110 (-)	1170	WP_011321514.1	cysteine desulfurase family protein	-
AVA_RS24645 (Ava_4857)	comA	6120224..6121852 (+)	1629	WP_041456500.1	DUF655 domain-containing protein	Machinery gene
AVA_RS24650 (Ava_4858)	-	6121953..6122435 (-)	483	WP_041456504.1	gluconokinase	-
AVA_RS24655 (Ava_4859)	sfsA	6122444..6123169 (-)	726	WP_011321517.1	DNA/RNA nuclease SfsA	-
AVA_RS24660 (Ava_4860)	-	6123641..6124309 (+)	669	WP_011321518.1	2OG-Fe dioxygenase family protein	-
AVA_RS24665 (Ava_4861)	gltX	6124393..6125838 (-)	1446	WP_011321519.1	glutamate--tRNA ligase	-

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 61021.15 Da
• Isoelectric Point: 7.8981

>NTDB_id=24709 AVA_RS24645 WP_041456500.1 6120224..6121852(+) (comA) [Trichormus variabilis ATCC 29413]
MRIFPAFRNFWVFFLIVAIAACQKVQSHNNRPAPLPQDSFVKVYFNQSESSEYREPYRQQTRLGDNLEQQIIDAISQAKS
TIDVAVQELRLPRIAQALKDKQKAGIKVRVILENTYTRSLSNLTPDEVKKLPEREQARYQEYFKFVDLNQDNQLSPEEVN
QRDALIILQNAKIPWIDDQADGSAGSKLMHHKFVVVDNRIVIVTSANFTLSDVFGDFSNSSSLGNANNLLHIDSPELAAL
VTEEFNLMWGDGVGGKPDSKFGLNKPVRPPQKITLGDNTITVHFSPTSPTLPWTQSSNGLINESLNLANKSIDMALFVFS
EQRLANTLEKRHQQQVSIRALIDKQFAYRYYSEALDMMGIALGNKCRYEIDNRPWSNPVTTVGVPTLREGDLLHHKFSVI
DNQTVITGSHNWSDAANHGNDETLIVINNPTIAAHYEREFARLYAKAQVGVPAKVQAQIQQEQKQCGQIKTPTSSELTPT
QVVNINTANLAELETLPGVGKKLAQKIITARQQRKFVSSQDLDKVPGISPKMIENWQGRIQF

Nucleotide

• Length: 1629 bp

>NTDB_id=24709 AVA_RS24645 WP_041456500.1 6120224..6121852(+) (comA) [Trichormus variabilis ATCC 29413]
GTGCGGATTTTCCCAGCATTTAGGAATTTTTGGGTATTTTTTTTGATAGTGGCGATCGCCGCCTGTCAAAAAGTCCAATC
TCACAATAATCGTCCTGCACCTCTACCGCAAGACTCATTTGTGAAAGTTTACTTTAATCAATCCGAATCCTCAGAATATC
GAGAACCTTACCGTCAACAAACTCGACTGGGAGATAACTTAGAACAGCAGATTATTGACGCTATTTCTCAAGCTAAATCT
ACTATCGATGTAGCAGTACAAGAATTGCGTTTACCGAGAATCGCCCAAGCCCTCAAAGACAAACAAAAAGCGGGAATCAA
AGTCAGAGTAATTTTAGAAAATACCTATACTCGTTCTTTGAGTAACTTGACACCAGATGAAGTCAAGAAATTACCTGAAC
GGGAACAAGCACGCTATCAAGAATACTTTAAATTTGTAGACCTAAACCAAGATAATCAACTCAGTCCTGAGGAAGTTAAT
CAGAGGGATGCACTGATAATTTTACAAAATGCCAAAATTCCTTGGATAGATGATCAAGCTGATGGTTCAGCAGGTAGTAA
GTTGATGCACCATAAGTTTGTGGTTGTAGATAATCGCATAGTAATTGTGACTTCGGCAAACTTCACCTTAAGCGACGTTT
TCGGGGATTTCTCTAATTCTTCAAGTTTGGGAAATGCCAACAACCTATTACACATTGATAGCCCAGAATTAGCAGCTTTG
GTCACAGAAGAATTCAACCTCATGTGGGGTGATGGTGTTGGAGGTAAACCAGACAGTAAATTCGGTTTAAATAAACCTGT
ACGTCCTCCCCAAAAAATTACCTTGGGTGACAACACAATTACTGTGCATTTTTCCCCAACTTCACCCACCTTACCTTGGA
CTCAAAGCAGCAATGGCTTAATTAATGAAAGCTTAAATTTAGCGAATAAATCTATTGATATGGCGTTGTTTGTTTTTTCC
GAACAGCGTCTTGCTAATACATTAGAAAAACGTCATCAACAACAAGTCTCAATTCGAGCATTAATTGATAAACAATTCGC
CTATCGTTATTACAGCGAAGCTTTAGATATGATGGGAATTGCCCTGGGTAATAAATGCCGATATGAAATTGATAATCGAC
CTTGGTCTAATCCCGTTACTACGGTGGGCGTACCCACTTTACGAGAAGGAGACCTGCTACACCATAAATTTTCTGTTATC
GACAACCAAACGGTAATTACAGGTTCTCACAACTGGTCTGATGCAGCAAATCATGGCAATGATGAGACTTTGATAGTAAT
TAATAATCCCACAATTGCTGCTCATTATGAGCGTGAATTTGCTCGTCTTTACGCTAAAGCTCAAGTCGGTGTCCCAGCCA
AAGTCCAAGCACAAATTCAACAAGAACAAAAGCAATGTGGTCAAATTAAAACTCCTACTTCCAGTGAACTTACTCCTACT
CAAGTGGTGAATATCAATACAGCAAATTTGGCAGAATTGGAGACCTTACCCGGTGTAGGTAAAAAGCTAGCCCAAAAAAT
TATCACCGCCCGTCAGCAGAGAAAATTTGTCTCATCACAAGACTTGGATAAAGTACCTGGAATCAGTCCAAAGATGATAG
AAAATTGGCAAGGGCGTATTCAATTTTAG

Domains

Predicted by InterproScan.

• PLD-like domain (PLDc_2) (71-249)

• PLD-like domain (PLDc_2) (302-443)

• Helix-hairpin-helix motif (HHH_3) (481-540)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Synechocystis sp. PCC 6803	49.355	100	0.494