Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CLI98_RS13905 Genome accession   NZ_CP023431
Coordinates   2742620..2743411 (+) Length   263 a.a.
NCBI ID   WP_022552784.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCGB 574     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2737620..2748411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI98_RS13880 (CLI98_02734) - 2739614..2740498 (+) 885 WP_022552781.1 PhzF family phenazine biosynthesis isomerase -
  CLI98_RS13885 (CLI98_02735) - 2740575..2741159 (+) 585 WP_022552782.1 nitroreductase -
  CLI98_RS13890 (CLI98_02736) - 2741198..2741389 (-) 192 WP_003155508.1 YfhD family protein -
  CLI98_RS13895 (CLI98_02737) - 2741461..2741571 (-) 111 WP_003155504.1 YfhE family protein -
  CLI98_RS13900 (CLI98_02738) - 2741629..2742528 (-) 900 WP_022552783.1 TIGR01777 family oxidoreductase -
  CLI98_RS13905 (CLI98_02739) recX 2742620..2743411 (+) 792 WP_022552784.1 recombination regulator RecX Regulator
  CLI98_RS13910 (CLI98_02740) - 2743418..2743732 (+) 315 WP_007408553.1 YfhH family protein -
  CLI98_RS13915 (CLI98_02741) - 2743877..2745070 (+) 1194 WP_038461766.1 MFS transporter -
  CLI98_RS13920 (CLI98_02742) - 2745110..2745499 (-) 390 WP_022552786.1 DUF2606 family protein -
  CLI98_RS13925 (CLI98_02743) - 2745462..2746373 (-) 912 WP_038461301.1 serine protease -
  CLI98_RS13930 - 2746518..2746670 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  CLI98_RS13935 (CLI98_02744) - 2746794..2747063 (+) 270 WP_003155492.1 YfhJ family protein -
  CLI98_RS13940 (CLI98_02745) - 2747195..2747722 (+) 528 WP_022552788.1 SH3 domain-containing protein -
  CLI98_RS13945 (CLI98_02746) - 2747808..2748143 (+) 336 WP_017419152.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30964.15 Da        Isoelectric Point: 6.2729

>NTDB_id=247086 CLI98_RS13905 WP_022552784.1 2742620..2743411(+) (recX) [Bacillus velezensis strain SCGB 574]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDDQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=247086 CLI98_RS13905 WP_022552784.1 2742620..2743411(+) (recX) [Bacillus velezensis strain SCGB 574]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAGAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCTTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGATCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment