Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AOY73_RS02160 Genome accession   NZ_CP028755
Coordinates   464699..465331 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain A20     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 459699..470331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY73_RS02135 (AOY73_02260) yhfG 459831..459998 (+) 168 WP_000736858.1 YhfG family protein -
  AOY73_RS02140 (AOY73_02265) fic 459988..460590 (+) 603 WP_042023739.1 putative adenosine monophosphate-protein transferase Fic -
  AOY73_RS02145 (AOY73_02270) pabA 460622..461185 (+) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  AOY73_RS02150 (AOY73_02275) argD 461271..462491 (+) 1221 WP_096980102.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AOY73_RS02155 (AOY73_02280) yhfK 462558..464648 (-) 2091 WP_001298205.1 YccS/YhfK family putative transporter -
  AOY73_RS02160 (AOY73_02285) crp 464699..465331 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AOY73_RS02165 (AOY73_02295) yhfA 465633..466037 (+) 405 WP_001148908.1 OsmC family protein -
  AOY73_RS02170 (AOY73_02300) prkB 466092..466961 (-) 870 WP_001274680.1 phosphoribulokinase -
  AOY73_RS02175 (AOY73_02305) yheU 467015..467233 (-) 219 WP_000907085.1 YheU family protein -
  AOY73_RS02180 (AOY73_02310) yheT 467227..468249 (-) 1023 WP_000057416.1 hydrolase -
  AOY73_RS02185 (AOY73_02315) yheS 468249..470162 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=247084 AOY73_RS02160 WP_000242755.1 464699..465331(-) (crp) [Escherichia coli strain A20]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=247084 AOY73_RS02160 WP_000242755.1 464699..465331(-) (crp) [Escherichia coli strain A20]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGCCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment