Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CLI98_RS09825 Genome accession   NZ_CP023431
Coordinates   1935924..1936214 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCGB 574     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1930924..1941214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI98_RS09785 (CLI98_01927) darA 1930941..1931270 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  CLI98_RS09790 (CLI98_01928) - 1931283..1931723 (+) 441 WP_004264730.1 DUF327 family protein -
  CLI98_RS09795 (CLI98_01929) holB 1931735..1932724 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  CLI98_RS09800 (CLI98_01930) ricT 1932727..1933554 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  CLI98_RS09805 (CLI98_01931) yabA 1933569..1933928 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  CLI98_RS09810 (CLI98_01932) - 1933989..1934732 (+) 744 WP_022552468.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CLI98_RS09815 (CLI98_01933) - 1934719..1935018 (+) 300 WP_022552469.1 GIY-YIG nuclease family protein -
  CLI98_RS09820 (CLI98_01934) rsmI 1934993..1935874 (+) 882 WP_022552470.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CLI98_RS09825 (CLI98_01935) abrB 1935924..1936214 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  CLI98_RS09830 (CLI98_01936) metG 1936697..1938688 (+) 1992 WP_022552471.1 methionine--tRNA ligase -
  CLI98_RS09835 (CLI98_01937) - 1938765..1939532 (+) 768 WP_032864028.1 TatD family hydrolase -
  CLI98_RS09840 (CLI98_01938) - 1939667..1940992 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=247076 CLI98_RS09825 WP_169510469.1 1935924..1936214(-) (abrB) [Bacillus velezensis strain SCGB 574]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=247076 CLI98_RS09825 WP_169510469.1 1935924..1936214(-) (abrB) [Bacillus velezensis strain SCGB 574]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment