Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CLI98_RS09595 Genome accession   NZ_CP023431
Coordinates   1893404..1894516 (+) Length   370 a.a.
NCBI ID   WP_022552462.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCGB 574     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1888404..1899516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI98_RS09570 (CLI98_01886) rnpA 1889117..1889467 (-) 351 WP_004392944.1 ribonuclease P protein component -
  CLI98_RS09575 rpmH 1889621..1889755 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  CLI98_RS09580 (CLI98_01887) dnaA 1890377..1891717 (+) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  CLI98_RS09585 (CLI98_01888) dnaN 1891902..1893038 (+) 1137 WP_021494589.1 DNA polymerase III subunit beta -
  CLI98_RS09590 (CLI98_01889) rlbA 1893173..1893388 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  CLI98_RS09595 (CLI98_01890) recF 1893404..1894516 (+) 1113 WP_022552462.1 DNA replication/repair protein RecF Machinery gene
  CLI98_RS09600 (CLI98_01891) remB 1894534..1894779 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  CLI98_RS09605 (CLI98_01892) gyrB 1894836..1896752 (+) 1917 WP_014720600.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CLI98_RS09610 (CLI98_01893) gyrA 1896968..1899427 (+) 2460 WP_014416706.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42416.34 Da        Isoelectric Point: 7.0881

>NTDB_id=247074 CLI98_RS09595 WP_022552462.1 1893404..1894516(+) (recF) [Bacillus velezensis strain SCGB 574]
MYIQNLDLTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=247074 CLI98_RS09595 WP_022552462.1 1893404..1894516(+) (recF) [Bacillus velezensis strain SCGB 574]
TTGTATATCCAAAATTTAGATTTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCTATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCACAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.054

100

0.941

Multiple sequence alignment