Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AVA_RS18690 Genome accession   NC_007413
Coordinates   4594048..4595157 (+) Length   369 a.a.
NCBI ID   WP_011320390.1    Uniprot ID   -
Organism   Trichormus variabilis ATCC 29413     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4589048..4600157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVA_RS18670 (Ava_3682) - 4589552..4589677 (+) 126 WP_010995199.1 photosystem II protein Y -
  AVA_RS18675 (Ava_3683) - 4589809..4591059 (+) 1251 WP_011320387.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  AVA_RS18680 (Ava_3684) - 4591462..4592250 (+) 789 WP_011320388.1 FkbM family methyltransferase -
  AVA_RS18685 (Ava_3685) - 4592517..4593815 (-) 1299 WP_011320389.1 ABC transporter substrate-binding protein -
  AVA_RS18690 (Ava_3686) pilM 4594048..4595157 (+) 1110 WP_011320390.1 type IV pilus assembly protein PilM Machinery gene
  AVA_RS18695 (Ava_3687) - 4595260..4596027 (+) 768 WP_011320391.1 PilN domain-containing protein -
  AVA_RS18700 (Ava_3688) - 4596024..4596785 (+) 762 WP_011320392.1 pilus assembly protein PilO -
  AVA_RS18705 (Ava_3689) - 4596903..4599338 (+) 2436 WP_011320393.1 type IV pilus secretin family protein -
  AVA_RS18710 (Ava_3690) - 4599472..4599798 (-) 327 WP_011320394.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40679.59 Da        Isoelectric Point: 4.5055

>NTDB_id=24707 AVA_RS18690 WP_011320390.1 4594048..4595157(+) (pilM) [Trichormus variabilis ATCC 29413]
MVKSFSSLFGKSHRGVGVEIAPERVNVVQIRKQRQGLKLESLTSVPVPEGIVTDGQITDPPAMAQLIQQALAESKIKKVS
RVATGVPGRDSIVRIIPVPSELDDKELRDMVLNHEAGLYLPYPREEADVDYQKLGYFVDEDGIEKVRVLLVATRKEVTDT
YISTFEQAGLQIGVLEINSFALIRTIRDQLRQFGPEEATVLVDIEFDSTEIAIIINGVPQFSRTVPIGTYQMQMAFARAM
SLPTSRDMEMLQGLVIPVNSVESDKTGMTETDPGIAGVLRILGELTDELRRSIDFYLNQSENVEIAQILLGGPGGGLEQL
HEFFTQRLSIPTSQIDPIGSLSLQVDEEKYPSTQRSGLGIVLGLGMREV

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=24707 AVA_RS18690 WP_011320390.1 4594048..4595157(+) (pilM) [Trichormus variabilis ATCC 29413]
GTGGTGAAAAGTTTCAGTAGTCTGTTTGGCAAATCTCATAGAGGGGTGGGTGTAGAAATTGCACCAGAACGGGTGAATGT
AGTTCAAATACGCAAGCAGCGCCAAGGCTTGAAACTTGAATCTTTAACATCAGTTCCAGTTCCGGAGGGGATTGTCACTG
ATGGTCAAATCACCGATCCTCCAGCGATGGCGCAATTAATTCAGCAGGCGCTGGCTGAAAGCAAAATCAAAAAAGTATCT
CGTGTGGCTACTGGTGTACCCGGACGAGATTCCATTGTCCGCATCATACCCGTACCATCAGAGTTGGATGACAAAGAATT
ACGGGATATGGTGTTAAATCACGAAGCCGGGTTGTATTTACCCTATCCTCGTGAAGAAGCTGATGTAGATTATCAGAAAC
TTGGGTACTTTGTGGATGAGGATGGCATTGAAAAAGTACGGGTGCTGTTAGTTGCTACCCGCAAGGAGGTGACAGATACA
TATATTAGTACTTTTGAGCAGGCAGGCTTACAAATTGGTGTTTTAGAAATTAACAGTTTTGCACTAATTCGGACAATTCG
TGATCAACTGCGGCAATTTGGGCCAGAAGAAGCAACGGTACTAGTTGATATAGAGTTCGACAGTACAGAAATTGCGATCA
TCATTAATGGCGTACCACAATTTTCCCGTACTGTCCCCATTGGCACTTATCAAATGCAAATGGCATTTGCTAGAGCTATG
AGTTTGCCCACTTCCAGAGATATGGAAATGTTACAGGGATTGGTGATTCCTGTAAATTCCGTAGAGAGCGATAAAACGGG
AATGACGGAAACCGACCCCGGTATTGCTGGCGTATTGCGAATCCTGGGAGAACTAACAGATGAGCTACGCCGTTCTATTG
ATTTTTACTTAAATCAGAGTGAAAACGTAGAAATAGCCCAGATTTTATTGGGTGGGCCTGGTGGCGGACTAGAACAACTT
CATGAGTTTTTTACTCAGCGTTTAAGTATTCCTACCAGTCAAATCGATCCTATAGGGTCTTTGTCCTTGCAAGTTGATGA
AGAAAAATATCCCTCTACACAACGTTCTGGCTTAGGAATAGTCCTTGGTTTAGGAATGAGGGAGGTATGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(284-368)

Type IV pilus assembly protein PilM; (PilM_2)

(17-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

63.587

99.729

0.634

Multiple sequence alignment