Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   AOY74_RS18600 Genome accession   NZ_CP028754
Coordinates   3873848..3875080 (+) Length   410 a.a.
NCBI ID   WP_152900124.1    Uniprot ID   -
Organism   Escherichia coli strain A21     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3868848..3880080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY74_RS18585 (AOY74_19575) - 3869363..3871039 (+) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -
  AOY74_RS18590 (AOY74_19580) kdsB 3871049..3871789 (+) 741 WP_000030761.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AOY74_RS18595 (AOY74_19585) - 3871786..3873813 (+) 2028 WP_152900125.1 capsular polysaccharide biosynthesis protein -
  AOY74_RS18600 (AOY74_19590) kpsS 3873848..3875080 (+) 1233 WP_152900124.1 capsular biosynthesis protein Regulator
  AOY74_RS18605 (AOY74_19595) - 3876382..3877056 (-) 675 WP_089708761.1 hypothetical protein -
  AOY74_RS18610 (AOY74_19600) - 3877721..3878383 (-) 663 WP_089708763.1 ABC transporter ATP-binding protein -
  AOY74_RS18615 (AOY74_19605) - 3878380..3879156 (-) 777 WP_089708765.1 ABC transporter permease -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48927.39 Da        Isoelectric Point: 10.0640

>NTDB_id=247052 AOY74_RS18600 WP_152900124.1 3873848..3875080(+) (kpsS) [Escherichia coli strain A21]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQINGVYYGSFISEYESKD
NNFTFIPQKR

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=247052 AOY74_RS18600 WP_152900124.1 3873848..3875080(+) (kpsS) [Escherichia coli strain A21]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GTCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGATTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTTAAGACGCAAATTAATGGGGTTTATTATGGGAGTTTTATTTCTGAATACGAGAGTAAGGAT
AATAACTTTACATTTATACCACAAAAGCGATAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.949

95.854

0.383