Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   CGZ65_RS06975 Genome accession   NZ_CP023429
Coordinates   1369059..1370798 (-) Length   579 a.a.
NCBI ID   WP_096295338.1    Uniprot ID   A0A3N4N1W0
Organism   Neisseria weixii strain 10022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1364059..1375798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ65_RS06950 (CGZ65_06950) tilS 1364211..1365539 (-) 1329 WP_096295334.1 tRNA lysidine(34) synthetase TilS -
  CGZ65_RS06960 (CGZ65_06960) - 1365861..1366820 (-) 960 WP_096295336.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  CGZ65_RS06965 (CGZ65_06965) - 1367042..1367443 (+) 402 WP_096295337.1 RNA-binding S4 domain-containing protein -
  CGZ65_RS06970 (CGZ65_06970) - 1367542..1368678 (-) 1137 WP_096296125.1 hypothetical protein -
  CGZ65_RS06975 (CGZ65_06975) recD 1369059..1370798 (-) 1740 WP_096295338.1 exodeoxyribonuclease V subunit alpha Machinery gene
  CGZ65_RS06980 (CGZ65_06980) lolD 1371042..1371721 (-) 680 Protein_1423 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  CGZ65_RS06985 (CGZ65_06985) - 1371714..1372964 (-) 1251 WP_096295339.1 lipoprotein-releasing ABC transporter permease subunit -
  CGZ65_RS06990 (CGZ65_06990) - 1373184..1373470 (+) 287 Protein_1425 hypothetical protein -
  CGZ65_RS06995 (CGZ65_06995) recR 1373542..1374147 (-) 606 WP_096295340.1 recombination mediator RecR -
  CGZ65_RS07000 (CGZ65_07000) - 1374227..1375756 (-) 1530 WP_096295341.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64109.41 Da        Isoelectric Point: 6.7356

>NTDB_id=247024 CGZ65_RS06975 WP_096295338.1 1369059..1370798(-) (recD) [Neisseria weixii strain 10022]
MNASIDLNQAAALAATQFLQHYAPEEAAVVTPYVEALFSALQSGHSFIWVSDKEAATLKRAALVVGSDGETPLVLNGRRL
FLGRLWQLEHDLAVEIKRLATAATDDVDWLQASQNLRNWFAEKGSEGQRDAAGLALLQAFMLITGGPGTGKTTTVAKLLG
LICDNATTLPRIALAAPTGKAAAHMTRSLHRALDGFDLPEHIKHHLLLLEGQTVHRLLKLRPPQMRPAFHAQQPLPLDVL
VVDEASMLDLSLLLQLLKAIPNGCRVIFLGDEFQLPSVGVGAVLAALSRKTVLDEDTHRRLSEYLPQHAFKVAENPSALS
QNIAHLHVSHRFGADSGIGCLARAVVSGDSETAWAQFARFPDELQVLHADMKHQAELLYHKHEKYWQAVDSGNVALAFGH
VADVVVLTAWRQDAENFNQAYFRHLQRQQRILGNIPWFAGQMIMVMRNDYALDVFNGDIGLIMQDSESANGLAAYFPFAE
GFRKIPISRLPAFETAFAMTVHKSQGSEYREVWLLPPSIGMANESDDVLSSLNNALLYTGITRARERFVFWGDKKIFEWA
VKNQKKRQTALDEMINALF

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=247024 CGZ65_RS06975 WP_096295338.1 1369059..1370798(-) (recD) [Neisseria weixii strain 10022]
ATGAATGCTTCCATCGATTTAAACCAAGCGGCGGCCTTGGCTGCGACACAGTTTTTGCAACACTACGCGCCCGAAGAAGC
GGCCGTGGTGACACCTTATGTTGAAGCCTTGTTTAGCGCACTGCAAAGCGGGCATTCGTTTATTTGGGTTAGCGATAAAG
AAGCGGCAACCTTGAAACGTGCTGCTTTGGTGGTCGGGTCAGATGGCGAAACGCCGCTGGTGCTGAACGGGCGGCGTTTG
TTTTTAGGCAGGCTTTGGCAGTTGGAGCACGACTTGGCTGTCGAGATCAAGCGGCTGGCGACAGCAGCCACCGATGATGT
CGATTGGTTGCAGGCTTCGCAAAATCTGCGGAACTGGTTTGCCGAAAAAGGCAGCGAAGGACAGCGTGATGCTGCGGGTT
TGGCTTTGTTGCAAGCTTTTATGCTGATTACCGGCGGCCCCGGTACCGGTAAAACGACCACGGTCGCCAAATTATTGGGC
TTGATTTGCGACAATGCCACCACTTTGCCGCGCATCGCCTTGGCCGCACCTACAGGCAAAGCAGCCGCGCATATGACACG
TTCGCTGCATCGTGCCTTAGACGGCTTCGATTTGCCCGAGCACATCAAGCATCATTTATTGCTTTTAGAAGGCCAAACCG
TACACCGCCTGTTGAAACTTCGTCCGCCGCAAATGCGGCCGGCTTTTCATGCGCAGCAGCCTTTGCCTTTAGACGTATTG
GTAGTGGATGAAGCATCGATGTTGGATTTATCACTGTTGCTGCAATTGCTCAAAGCTATCCCGAACGGTTGCCGCGTTAT
CTTCTTGGGTGATGAATTTCAGTTACCATCGGTTGGCGTTGGTGCGGTATTGGCTGCCTTGTCACGAAAAACCGTTCTGG
ATGAAGATACTCATCGCCGTTTGAGCGAATATCTGCCTCAGCATGCATTTAAAGTTGCCGAAAATCCGTCGGCGTTGTCG
CAAAACATCGCCCATTTGCATGTCAGCCACCGCTTTGGTGCAGATAGCGGCATTGGTTGTTTGGCTCGGGCGGTGGTTTC
CGGAGATAGCGAAACAGCGTGGGCGCAGTTTGCACGCTTTCCTGATGAATTGCAGGTATTGCATGCCGATATGAAACATC
AAGCCGAATTGCTGTATCACAAGCATGAAAAATACTGGCAGGCTGTAGATAGTGGCAACGTGGCGCTGGCATTCGGTCAT
GTGGCGGATGTGGTGGTGTTAACGGCATGGCGCCAAGATGCGGAAAATTTTAATCAGGCTTATTTCCGCCATTTGCAGCG
GCAGCAGCGCATATTGGGTAATATACCGTGGTTTGCCGGACAAATGATTATGGTCATGCGCAATGATTATGCACTGGATG
TATTTAATGGCGACATCGGCCTGATTATGCAGGATAGCGAATCGGCTAATGGTTTGGCCGCTTATTTTCCATTTGCGGAA
GGTTTCAGAAAAATCCCCATCAGTCGCTTGCCCGCTTTTGAAACGGCGTTTGCCATGACCGTGCACAAAAGCCAAGGTTC
GGAATATCGGGAGGTGTGGCTGTTGCCACCAAGTATTGGTATGGCAAATGAAAGCGATGATGTGTTAAGCAGCCTGAATA
ATGCGCTGTTGTACACAGGTATCACTCGTGCGCGAGAGCGTTTTGTGTTTTGGGGCGACAAAAAAATATTTGAATGGGCA
GTAAAAAACCAAAAAAAACGTCAAACAGCGTTAGATGAAATGATTAATGCACTGTTTTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(496-547)

AAA domain (AAA_30)

(125-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3N4N1W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

61.989

97.237

0.603

Multiple sequence alignment