Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY74_RS06245 Genome accession   NZ_CP028754
Coordinates   1331555..1332160 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain A21     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1326555..1337160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY74_RS22715 - 1327109..1327207 (+) 99 Protein_1198 hypothetical protein -
  AOY74_RS06215 (AOY74_06565) rsmS 1327260..1327421 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY74_RS06220 (AOY74_06570) priC 1327435..1327962 (-) 528 WP_000844854.1 primosomal replication protein N'' -
  AOY74_RS06225 (AOY74_06575) ybaN 1328032..1328409 (+) 378 WP_001188900.1 DUF454 family protein -
  AOY74_RS06230 (AOY74_06585) apt 1328562..1329113 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY74_RS06235 (AOY74_06590) dnaX 1329242..1331173 (+) 1932 WP_001524179.1 DNA polymerase III subunit gamma/tau -
  AOY74_RS06240 (AOY74_06595) ybaB 1331226..1331555 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY74_RS06245 (AOY74_06600) recR 1331555..1332160 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AOY74_RS06250 (AOY74_06605) htpG 1332270..1334144 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  AOY74_RS06255 (AOY74_06615) adk 1334325..1334969 (+) 645 WP_001220233.1 adenylate kinase -
  AOY74_RS06260 (AOY74_06620) hemH 1335101..1336063 (+) 963 WP_022296627.1 ferrochelatase -
  AOY74_RS06265 (AOY74_06625) aes 1336060..1337019 (-) 960 WP_001524183.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=247018 AOY74_RS06245 WP_001195025.1 1331555..1332160(+) (recR) [Escherichia coli strain A21]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=247018 AOY74_RS06245 WP_001195025.1 1331555..1332160(+) (recR) [Escherichia coli strain A21]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443