Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CNX70_RS20415 Genome accession   NZ_CP023422
Coordinates   4613645..4615021 (-) Length   458 a.a.
NCBI ID   WP_096236532.1    Uniprot ID   A0A290WZD4
Organism   Janthinobacterium svalbardensis strain PAMC 27463     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4608645..4620021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNX70_RS20390 (CNX70_20395) rraA 4608900..4609394 (-) 495 WP_096236524.1 ribonuclease E activity regulator RraA -
  CNX70_RS20395 (CNX70_20400) - 4609427..4610677 (-) 1251 WP_096236526.1 MFS transporter -
  CNX70_RS20400 (CNX70_20405) - 4610778..4611578 (+) 801 WP_167389699.1 helix-turn-helix transcriptional regulator -
  CNX70_RS20405 (CNX70_20410) fliD 4611575..4612960 (-) 1386 WP_096238586.1 flagellar filament capping protein FliD -
  CNX70_RS20410 (CNX70_20415) - 4613193..4613513 (-) 321 WP_279629320.1 PilZ domain-containing protein -
  CNX70_RS20415 (CNX70_20420) radA 4613645..4615021 (-) 1377 WP_096236532.1 DNA repair protein RadA Machinery gene
  CNX70_RS20420 (CNX70_20425) alr 4615107..4616198 (-) 1092 WP_096236534.1 alanine racemase -
  CNX70_RS20425 (CNX70_20430) lplT 4616445..4617707 (+) 1263 WP_096236536.1 lysophospholipid transporter LplT -
  CNX70_RS20430 (CNX70_20435) - 4617743..4618681 (-) 939 WP_096236538.1 DUF1853 family protein -
  CNX70_RS20435 (CNX70_20440) - 4618674..4619531 (-) 858 WP_096236540.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48961.54 Da        Isoelectric Point: 7.2144

>NTDB_id=246969 CNX70_RS20415 WP_096236532.1 4613645..4615021(-) (radA) [Janthinobacterium svalbardensis strain PAMC 27463]
MAKVKTIYTCSDCGAISNKWMGQCTSCNQWNTMVETLPETGGNNRYSNPQHMSLAQTAPVLSLDDIDAIDVPRFGTGIEE
FDRVLGGGMVAGGVVLIGGDPGIGKSTLLLQALANMSHHKRVLYVSGEESGAQIALRAKRLVIDAKELKLQAEIQLEKIL
GTLADLKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRAAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSHL
PNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLA
GEIRPAPRGQERLREAAKLGFTLAVVPKSNLPKQAIEGLKVIGVERIDEAFNKLRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=246969 CNX70_RS20415 WP_096236532.1 4613645..4615021(-) (radA) [Janthinobacterium svalbardensis strain PAMC 27463]
ATGGCAAAAGTCAAGACCATCTACACCTGCAGCGATTGCGGCGCCATCAGTAATAAATGGATGGGGCAATGCACCTCGTG
CAACCAGTGGAACACCATGGTGGAAACCCTGCCCGAAACGGGCGGCAACAACCGCTATTCGAACCCGCAGCACATGTCGC
TGGCGCAGACGGCGCCCGTGCTGTCGCTCGACGATATCGATGCCATCGACGTGCCCCGCTTCGGCACGGGCATCGAAGAA
TTCGACCGCGTGCTGGGCGGCGGCATGGTGGCTGGCGGCGTGGTACTGATCGGCGGCGATCCCGGCATCGGCAAGTCGAC
CCTGCTGCTGCAGGCGCTGGCCAACATGTCGCACCACAAGCGCGTGCTGTATGTCAGTGGTGAAGAGTCCGGCGCGCAGA
TCGCCCTGCGCGCCAAGCGTCTCGTCATCGATGCCAAGGAACTCAAATTGCAGGCCGAGATCCAGCTGGAAAAAATCCTC
GGCACCCTGGCTGACCTGAAGCCGGAAGTGGTGGTGATCGATTCGATCCAGACCGTGTATTCGGACGCGCTCAGCTCGGC
GCCCGGTTCCGTGGCGCAAGTGCGCGAATGCGCGGCGCAGCTGACGCGCGCGGCCAAGCAGACGGGAGTGACCATCATCC
TGGTGGGGCACGTGACGAAAGAGGGCGCGCTGGCCGGCCCCCGCGTGCTCGAACACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACGCCCATTCCAGCTTCCGCCTGGTGCGCGCCATCAAGAACCGTTTCGGCGCCGTCAACGAACTGGGCGTGTT
CGCCATGACGGAAAAGGGGCTGAAAGGGGTGTCGAACCCGTCGGCGCTGTTCCTGTCGCAGCACGACAACCAGGTGCCCG
GTTCCTGCGTGATGGTGACGCAGGAAGGCACGCGTCCGCTGCTGGTGGAAATCCAGGCCCTGGTCGACACCAGCCACTTG
CCGAATGCGCGCCGCCTGTCCGTCGGCCTGGAGCAGAACCGCCTGGCCATGCTGCTGGCCGTGGCGCACCGCCACGCGGG
CATCGCCGCCTTCGACCAGGATGTGTTCATCAACGCCGTCGGTGGCGTCAAAATTACAGAGCCGGCGGCCGACCTGGCCG
TGTTGTTGGCGATTAACTCGTCGATGCGCAACAAACCCTTGCCGCGCGGACTCGTGGTGTTTGGCGAAGTGGGGCTGGCC
GGCGAGATCCGCCCTGCGCCACGGGGTCAGGAACGCTTGCGCGAAGCGGCCAAGCTGGGCTTTACGCTGGCCGTGGTGCC
GAAGTCCAACCTGCCCAAGCAAGCGATCGAGGGGCTCAAGGTCATCGGCGTCGAGCGTATCGACGAGGCGTTCAACAAAC
TGCGCGACCTGGAGTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290WZD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.366

100

0.485
  radA Streptococcus pneumoniae Rx1

47.609

100

0.478
  radA Streptococcus pneumoniae D39

47.609

100

0.478
  radA Streptococcus pneumoniae R6

47.609

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.609

100

0.478
  radA Streptococcus mitis NCTC 12261

47.609

100

0.478
  radA Streptococcus mitis SK321

47.712

100

0.478

Multiple sequence alignment