Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CNX70_RS17705 Genome accession   NZ_CP023422
Coordinates   3989817..3992240 (-) Length   807 a.a.
NCBI ID   WP_096235791.1    Uniprot ID   -
Organism   Janthinobacterium svalbardensis strain PAMC 27463     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3984817..3997240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNX70_RS17675 (CNX70_17675) - 3985215..3985556 (-) 342 WP_096235787.1 FlxA-like family protein -
  CNX70_RS17680 (CNX70_17680) dcd 3985677..3986246 (-) 570 WP_071076830.1 dCTP deaminase -
  CNX70_RS17685 (CNX70_17685) - 3986380..3987180 (-) 801 WP_096235788.1 alpha/beta hydrolase -
  CNX70_RS17690 (CNX70_17690) - 3987239..3987934 (-) 696 WP_096235789.1 HAD family phosphatase -
  CNX70_RS17695 (CNX70_17695) - 3987956..3988717 (-) 762 WP_071076827.1 TSUP family transporter -
  CNX70_RS17700 (CNX70_17700) - 3988869..3989798 (+) 930 WP_096235790.1 LysR family transcriptional regulator -
  CNX70_RS17705 (CNX70_17705) comA 3989817..3992240 (-) 2424 WP_096235791.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CNX70_RS17710 (CNX70_17710) - 3992446..3993279 (+) 834 WP_096235792.1 class I SAM-dependent methyltransferase -
  CNX70_RS17715 (CNX70_17715) - 3993367..3995355 (+) 1989 WP_096235793.1 helicase-related protein -
  CNX70_RS17720 (CNX70_17720) - 3995359..3995832 (-) 474 WP_157751096.1 T6SS effector amidase Tae4 family protein -
  CNX70_RS17725 (CNX70_17725) - 3995927..3997153 (-) 1227 WP_244198841.1 PQQ-dependent sugar dehydrogenase -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 87174.43 Da        Isoelectric Point: 10.1051

>NTDB_id=246968 CNX70_RS17705 WP_096235791.1 3989817..3992240(-) (comA) [Janthinobacterium svalbardensis strain PAMC 27463]
MRTLILGFAAGAAWLQTQASLPPHAGVLLWLIAGSGFMVGLALRRHARWRCFVALAAGAGLGFYWAAWLAQAAMAPQLAL
ADEGQDIIVTGTVASLPYRFEQGVRFNFSVDKAVGAQVPPLIALSWYAGFRDEVTNEVGDVQPGERWRLTVRLQRPHGNA
NPMGFDYEAWLLEQGVRATGYVRPQPRADTPNVRLAAFVPGFGNVVEASRAALRARILRSLEGKQYAGVIVALVVGDQRA
IPQSDWQVFNRTGVSHLISISGLHITMIAGLFALGAGALWRRSFFTERQLPLLLPAQKVAALAGALAAFVYVLLAGFGVP
AQRTLYMLLVVALALWLGRITSIVHVLCLALGVVVVLDPWAVLWPGFWLSFGAVASMLYATAGRTTAPLPQGASRWRRLR
AAVALGAHTQYVVTVGLVPLTMLLFSQVSLVSPVANALAIPVISLVVTPLSLVGSLLPAPLSDGLLLLAHAIVQMLAQVL
EWLGARRFAVWAAPAPPIWSFCWALFGTAWLLAPRGWPHRWAGMLGWLPLLTALPSSPPPGQMWVTAFDVGQGMAVLVET
HAHRLLYDTGPAYSLDSDGASRVIVPYLRARGIARLDGVIISHSDLDHAGGAVSLLENIDVGWLASSLFDGHPAVDARRQ
ARRPYLHCMAGQRWSWEGVHFAMLHPLPASHTDIALKPNARSCTVKITAGKHAILLAGDIEAAQEAQLLARSADGELAAD
VLLAPHHGSGTSSTQAFLNAVHPGLAIFQVGHRNRYKHPKAQVYARYGDMGITRLRTDVEGAVVLEFGTDIEVTQYRASR
PRYWHGR

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=246968 CNX70_RS17705 WP_096235791.1 3989817..3992240(-) (comA) [Janthinobacterium svalbardensis strain PAMC 27463]
ATGCGCACCCTGATACTCGGCTTTGCCGCTGGCGCCGCCTGGCTGCAAACGCAGGCCAGTTTGCCGCCCCATGCTGGCGT
GCTGCTGTGGCTGATCGCTGGCTCAGGGTTCATGGTTGGTCTGGCGCTGCGCCGCCACGCGCGTTGGCGCTGCTTTGTCG
CGCTTGCCGCTGGTGCGGGATTGGGCTTCTATTGGGCCGCCTGGCTGGCCCAGGCCGCCATGGCGCCGCAACTGGCGCTG
GCCGACGAGGGGCAGGACATCATCGTCACGGGCACGGTGGCCAGCCTGCCGTACCGTTTCGAGCAGGGCGTGCGCTTCAA
TTTTTCTGTGGACAAGGCAGTTGGCGCGCAGGTGCCGCCTTTGATCGCGCTGTCCTGGTACGCGGGGTTTCGTGACGAAG
TGACGAACGAGGTGGGCGACGTGCAGCCGGGTGAACGCTGGCGCCTGACGGTGCGGCTGCAGCGTCCACATGGCAACGCG
AATCCCATGGGCTTTGACTACGAGGCGTGGCTGCTGGAGCAGGGCGTGCGCGCCACGGGCTATGTGCGGCCGCAGCCGCG
CGCCGATACGCCGAACGTGCGCCTGGCGGCCTTCGTGCCCGGCTTCGGCAACGTGGTGGAGGCCAGCCGCGCGGCGTTGC
GCGCGCGCATACTGCGCAGCCTGGAAGGCAAGCAGTATGCGGGCGTGATCGTGGCACTGGTGGTGGGCGACCAGCGCGCC
ATCCCCCAGTCGGACTGGCAAGTGTTCAACCGCACGGGCGTGAGCCATTTGATCTCGATATCGGGTCTTCACATCACCAT
GATCGCGGGACTGTTCGCCCTGGGCGCGGGCGCGCTGTGGCGGCGCTCGTTTTTCACGGAGCGGCAACTGCCTTTGCTGT
TGCCGGCGCAAAAAGTGGCTGCCCTGGCCGGCGCGCTGGCGGCATTTGTGTATGTGCTGCTGGCGGGCTTCGGTGTGCCC
GCGCAGCGCACCTTGTATATGTTGCTGGTGGTGGCGCTGGCCTTGTGGCTGGGGCGCATCACCAGCATAGTCCACGTGCT
GTGCCTGGCGCTGGGTGTGGTGGTGGTGCTCGATCCGTGGGCCGTGCTGTGGCCCGGTTTCTGGCTGTCATTCGGCGCCG
TCGCCAGCATGCTGTACGCGACGGCGGGCCGCACCACGGCGCCCTTGCCGCAGGGCGCCAGCCGCTGGCGGCGTTTGCGC
GCGGCTGTGGCGCTGGGCGCGCATACGCAGTATGTGGTGACGGTGGGGCTGGTGCCCTTGACGATGCTGCTGTTCTCGCA
AGTCTCGCTGGTCAGCCCCGTGGCCAATGCGCTGGCCATTCCCGTCATCAGCCTGGTCGTCACGCCCTTGTCCCTGGTGG
GCAGCCTGCTGCCCGCGCCCCTGTCTGACGGGTTGCTGTTGCTGGCGCACGCCATCGTGCAGATGCTGGCGCAGGTGCTG
GAGTGGCTGGGGGCGCGCCGCTTTGCCGTGTGGGCGGCGCCCGCGCCGCCAATCTGGAGTTTTTGCTGGGCATTGTTTGG
CACGGCCTGGCTGCTGGCGCCACGCGGATGGCCCCATCGCTGGGCCGGCATGCTGGGCTGGCTGCCCCTGCTGACGGCCT
TGCCGTCCAGCCCGCCACCTGGCCAGATGTGGGTCACGGCCTTTGACGTGGGCCAAGGCATGGCCGTGCTGGTGGAAACG
CACGCTCACCGCCTGCTGTACGACACGGGACCCGCCTACAGCCTCGACTCCGATGGCGCCAGCCGGGTCATCGTGCCTTA
CTTGCGCGCGCGCGGCATAGCCAGGCTTGACGGCGTGATCATTTCCCACAGCGACCTCGATCACGCGGGCGGCGCCGTAT
CCTTGCTGGAAAACATAGACGTAGGCTGGCTGGCCTCGTCGCTGTTCGACGGCCACCCGGCCGTCGATGCCCGGCGGCAA
GCCCGGCGTCCGTATCTGCACTGCATGGCGGGCCAGCGCTGGAGCTGGGAAGGCGTGCACTTCGCCATGCTGCATCCGCT
GCCCGCCAGCCACACGGACATTGCACTGAAACCGAACGCCCGCAGTTGCACCGTGAAAATCACGGCGGGCAAGCATGCGA
TCTTGCTGGCCGGCGACATCGAAGCGGCGCAGGAAGCGCAATTGCTGGCGCGCTCGGCAGACGGCGAGCTGGCGGCCGAT
GTGCTGCTGGCGCCCCATCATGGCAGTGGTACTTCGTCGACACAGGCATTTTTGAACGCCGTCCATCCCGGTCTGGCGAT
CTTCCAGGTCGGGCACCGCAATCGCTATAAACATCCGAAGGCGCAGGTGTATGCGCGCTATGGCGACATGGGGATCACGC
GGCTGCGCACGGATGTGGAAGGGGCGGTAGTGCTGGAGTTTGGAACGGATATTGAGGTGACGCAGTATCGCGCGAGCCGG
CCGCGTTACTGGCATGGGCGCTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(550-747)

Competence protein (Competence)

(233-516)

Domain of unknown function (DUF4131) (DUF4131)

(26-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.619

100

0.496

Multiple sequence alignment