Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CNX70_RS05560 | Genome accession | NZ_CP023422 |
| Coordinates | 1255640..1256698 (-) | Length | 352 a.a. |
| NCBI ID | WP_096233884.1 | Uniprot ID | A0A290WS52 |
| Organism | Janthinobacterium svalbardensis strain PAMC 27463 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1250640..1261698
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNX70_RS05530 (CNX70_05530) | - | 1250875..1251606 (-) | 732 | WP_096233880.1 | ABC transporter ATP-binding protein | - |
| CNX70_RS05535 (CNX70_05535) | - | 1251670..1252125 (-) | 456 | WP_096233881.1 | hypothetical protein | - |
| CNX70_RS05540 (CNX70_05540) | - | 1252304..1252570 (+) | 267 | WP_071079406.1 | hypothetical protein | - |
| CNX70_RS05545 (CNX70_05545) | rpoH | 1252659..1253558 (-) | 900 | WP_170840566.1 | RNA polymerase sigma factor RpoH | - |
| CNX70_RS05550 (CNX70_05550) | ftsX | 1253971..1254891 (-) | 921 | WP_096233882.1 | permease-like cell division protein FtsX | - |
| CNX70_RS05555 (CNX70_05555) | - | 1254888..1255631 (-) | 744 | WP_096233883.1 | ATP-binding cassette domain-containing protein | - |
| CNX70_RS05560 (CNX70_05560) | pilA | 1255640..1256698 (-) | 1059 | WP_096233884.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| CNX70_RS05565 (CNX70_05565) | - | 1256820..1257800 (-) | 981 | WP_244199045.1 | MerR family transcriptional regulator | - |
| CNX70_RS05570 (CNX70_05570) | - | 1258015..1259328 (+) | 1314 | WP_096233885.1 | FAD-dependent oxidoreductase | - |
| CNX70_RS05575 (CNX70_05575) | - | 1259318..1260109 (+) | 792 | WP_096233886.1 | DUF1365 domain-containing protein | - |
| CNX70_RS05580 (CNX70_05580) | - | 1260106..1261347 (+) | 1242 | WP_244199046.1 | cyclopropane-fatty-acyl-phospholipid synthase family protein | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37427.74 Da Isoelectric Point: 8.3795
>NTDB_id=246965 CNX70_RS05560 WP_096233884.1 1255640..1256698(-) (pilA) [Janthinobacterium svalbardensis strain PAMC 27463]
MFSFFKKKPTAPEAAPAEPLVLPAATPPAPQPAARPLSGAPAELVPVIVAAEPEKKSWMTRLKAGLSKTSNTLSVLFVGA
KIDDALYEELEAALLMSDAGIDATEFLLTELKKKVKEDKLLDAAAVKAALKVLLIDLLSPLEKRFELGRHKPLVMMISGV
NGAGKTTTIGKLAKHMQSNKQSVLLAAGDTFRAAAREQLMVWGERNNVTVISQESGDPAAVAYDSVQSAKARGTDVVMVD
TAGRLPTQLHLMEELKKIKRVIGKGMEGAPHETLLVIDGNTGQNALTQVKAFDDALQLTGLVITKLDGTAKGGVLAAIAR
VRPVPVYFIGIGEKIEDLQPFVAAEFVEALLG
MFSFFKKKPTAPEAAPAEPLVLPAATPPAPQPAARPLSGAPAELVPVIVAAEPEKKSWMTRLKAGLSKTSNTLSVLFVGA
KIDDALYEELEAALLMSDAGIDATEFLLTELKKKVKEDKLLDAAAVKAALKVLLIDLLSPLEKRFELGRHKPLVMMISGV
NGAGKTTTIGKLAKHMQSNKQSVLLAAGDTFRAAAREQLMVWGERNNVTVISQESGDPAAVAYDSVQSAKARGTDVVMVD
TAGRLPTQLHLMEELKKIKRVIGKGMEGAPHETLLVIDGNTGQNALTQVKAFDDALQLTGLVITKLDGTAKGGVLAAIAR
VRPVPVYFIGIGEKIEDLQPFVAAEFVEALLG
Nucleotide
Download Length: 1059 bp
>NTDB_id=246965 CNX70_RS05560 WP_096233884.1 1255640..1256698(-) (pilA) [Janthinobacterium svalbardensis strain PAMC 27463]
ATGTTTAGTTTCTTCAAGAAAAAACCCACCGCTCCCGAGGCTGCGCCAGCCGAGCCCCTCGTCCTTCCCGCCGCCACGCC
GCCTGCCCCGCAGCCTGCCGCCAGGCCCCTGAGCGGCGCGCCGGCCGAGCTCGTGCCCGTGATCGTGGCTGCCGAACCCG
AGAAAAAATCGTGGATGACGCGCCTGAAGGCCGGCCTGTCGAAAACCTCGAACACCTTGTCCGTGCTGTTCGTCGGCGCG
AAGATCGACGACGCCCTGTACGAAGAGCTGGAAGCAGCGCTGCTGATGTCCGACGCGGGCATCGACGCCACCGAATTCCT
GCTCACGGAATTGAAAAAAAAGGTCAAGGAAGACAAGCTGCTCGACGCCGCCGCCGTCAAGGCCGCGCTGAAAGTGCTGC
TGATCGACCTGCTCTCGCCGCTGGAAAAGCGCTTCGAGCTGGGCCGCCACAAGCCGCTGGTGATGATGATTTCCGGCGTG
AATGGCGCCGGCAAGACCACCACCATCGGCAAGCTGGCCAAGCACATGCAGTCGAACAAGCAGTCCGTGCTGCTGGCCGC
AGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGTTGATGGTCTGGGGCGAGCGCAACAACGTCACCGTCATCTCGCAGG
AATCGGGCGACCCGGCTGCCGTGGCCTACGACTCCGTGCAATCGGCCAAAGCGCGCGGCACCGACGTGGTGATGGTCGAC
ACGGCAGGCCGCTTGCCGACGCAGTTGCACCTGATGGAAGAGTTGAAGAAAATCAAGCGTGTGATCGGCAAGGGCATGGA
AGGCGCGCCGCATGAAACCCTGCTCGTCATCGACGGCAACACGGGCCAGAATGCCCTCACGCAAGTGAAAGCGTTCGACG
ATGCCCTGCAATTGACCGGCCTGGTGATTACCAAGCTCGATGGTACCGCCAAGGGCGGCGTGCTGGCGGCGATTGCCCGC
GTACGCCCCGTCCCCGTGTATTTCATCGGCATCGGTGAGAAAATTGAAGACTTGCAGCCTTTCGTGGCTGCTGAATTTGT
CGAAGCGCTGCTCGGATAA
ATGTTTAGTTTCTTCAAGAAAAAACCCACCGCTCCCGAGGCTGCGCCAGCCGAGCCCCTCGTCCTTCCCGCCGCCACGCC
GCCTGCCCCGCAGCCTGCCGCCAGGCCCCTGAGCGGCGCGCCGGCCGAGCTCGTGCCCGTGATCGTGGCTGCCGAACCCG
AGAAAAAATCGTGGATGACGCGCCTGAAGGCCGGCCTGTCGAAAACCTCGAACACCTTGTCCGTGCTGTTCGTCGGCGCG
AAGATCGACGACGCCCTGTACGAAGAGCTGGAAGCAGCGCTGCTGATGTCCGACGCGGGCATCGACGCCACCGAATTCCT
GCTCACGGAATTGAAAAAAAAGGTCAAGGAAGACAAGCTGCTCGACGCCGCCGCCGTCAAGGCCGCGCTGAAAGTGCTGC
TGATCGACCTGCTCTCGCCGCTGGAAAAGCGCTTCGAGCTGGGCCGCCACAAGCCGCTGGTGATGATGATTTCCGGCGTG
AATGGCGCCGGCAAGACCACCACCATCGGCAAGCTGGCCAAGCACATGCAGTCGAACAAGCAGTCCGTGCTGCTGGCCGC
AGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGTTGATGGTCTGGGGCGAGCGCAACAACGTCACCGTCATCTCGCAGG
AATCGGGCGACCCGGCTGCCGTGGCCTACGACTCCGTGCAATCGGCCAAAGCGCGCGGCACCGACGTGGTGATGGTCGAC
ACGGCAGGCCGCTTGCCGACGCAGTTGCACCTGATGGAAGAGTTGAAGAAAATCAAGCGTGTGATCGGCAAGGGCATGGA
AGGCGCGCCGCATGAAACCCTGCTCGTCATCGACGGCAACACGGGCCAGAATGCCCTCACGCAAGTGAAAGCGTTCGACG
ATGCCCTGCAATTGACCGGCCTGGTGATTACCAAGCTCGATGGTACCGCCAAGGGCGGCGTGCTGGCGGCGATTGCCCGC
GTACGCCCCGTCCCCGTGTATTTCATCGGCATCGGTGAGAAAATTGAAGACTTGCAGCCTTTCGTGGCTGCTGAATTTGT
CGAAGCGCTGCTCGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
56.707 |
93.182 |
0.528 |