Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CNX70_RS03680 Genome accession   NZ_CP023422
Coordinates   845464..846942 (+) Length   492 a.a.
NCBI ID   WP_096233527.1    Uniprot ID   A0A290WR75
Organism   Janthinobacterium svalbardensis strain PAMC 27463     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 840464..851942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNX70_RS03655 (CNX70_03655) - 841918..842928 (+) 1011 WP_096233519.1 KpsF/GutQ family sugar-phosphate isomerase -
  CNX70_RS03660 (CNX70_03660) - 842928..843461 (+) 534 WP_096233521.1 HAD hydrolase family protein -
  CNX70_RS03665 (CNX70_03665) lptC 843504..844115 (+) 612 WP_244199025.1 LPS export ABC transporter periplasmic protein LptC -
  CNX70_RS03670 (CNX70_03670) lptA 844141..844704 (+) 564 WP_096233525.1 lipopolysaccharide transport periplasmic protein LptA -
  CNX70_RS03675 (CNX70_03675) lptB 844704..845459 (+) 756 WP_071079722.1 LPS export ABC transporter ATP-binding protein -
  CNX70_RS03680 (CNX70_03680) rpoN/rpoN1 845464..846942 (+) 1479 WP_096233527.1 RNA polymerase factor sigma-54 Machinery gene
  CNX70_RS03685 (CNX70_03685) raiA 847012..847374 (+) 363 WP_035824124.1 ribosome-associated translation inhibitor RaiA -
  CNX70_RS03690 (CNX70_03690) - 847510..848595 (+) 1086 WP_096233529.1 enoyl-CoA hydratase/isomerase family protein -
  CNX70_RS03695 (CNX70_03695) rapZ 848596..849459 (-) 864 WP_096233532.1 RNase adapter RapZ -
  CNX70_RS03700 (CNX70_03700) hprK 849576..850511 (-) 936 WP_034753337.1 HPr(Ser) kinase/phosphatase -
  CNX70_RS03705 (CNX70_03705) - 850548..851030 (-) 483 WP_096233534.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54536.16 Da        Isoelectric Point: 5.1021

>NTDB_id=246960 CNX70_RS03680 WP_096233527.1 845464..846942(+) (rpoN/rpoN1) [Janthinobacterium svalbardensis strain PAMC 27463]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDHSLRLLSDGALSSTAAPAEAPPQPP
GQDAPAAPAEAETFDGEAGDSPAAADGGDSDWSEASRGKAPDDEDSRPQLEAHHCTLREHLMEQMRVTVLELRDRALVEL
IIDALDDNGYLEESLDDILARLPEELEIDADEMRTALSLLQSFDPPGVGARNASECLALQIKRLPHVAMVTRRMALVIVE
KHLAWFAQRDFNKLKKALDCDEEDLREAQTVIRQCNPHPGAVFASDVSDYVVPDVVVKRARNGWQVTLNNDVMPRLRVNA
MYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSLRKCL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=246960 CNX70_RS03680 WP_096233527.1 845464..846942(+) (rpoN/rpoN1) [Janthinobacterium svalbardensis strain PAMC 27463]
ATGAAACAATCATTGCAGCTGCGCACTTCGCAGCACCTGGCACTGACGCCGCAGTTGCAGCAATCGATACGCCTGTTGCA
ATTGTCTACCCTGGAATTACACCAGGAACTAGAGCAACTGCTGACGGACAATCCCTTGCTCGAGCGCCTCGACGATCCGC
TCGACCATTCGCTGCGCCTGCTGTCCGACGGGGCCCTGAGTTCCACGGCCGCGCCGGCCGAAGCACCGCCCCAGCCGCCA
GGCCAGGATGCGCCCGCGGCGCCGGCCGAAGCAGAAACCTTTGACGGCGAAGCGGGCGACAGCCCGGCCGCCGCGGATGG
TGGCGACAGCGACTGGAGCGAGGCGAGCCGGGGCAAGGCGCCCGACGACGAAGATTCGCGTCCGCAATTGGAGGCCCATC
ACTGCACCCTGCGCGAGCACTTGATGGAGCAGATGCGCGTGACGGTGCTCGAATTGCGCGACCGCGCGCTGGTCGAGCTG
ATCATCGACGCGCTCGACGACAATGGCTACCTGGAAGAGTCGCTCGACGACATCCTGGCGCGCCTGCCGGAAGAGCTGGA
AATCGACGCCGACGAGATGCGTACGGCCTTGTCCCTGCTGCAAAGTTTCGATCCGCCCGGCGTGGGTGCGCGCAACGCGT
CCGAATGCCTGGCGCTGCAAATCAAGCGCTTGCCGCACGTCGCCATGGTGACGCGGCGCATGGCCCTCGTCATCGTGGAA
AAGCACCTGGCCTGGTTTGCCCAGCGCGATTTCAACAAGCTGAAAAAAGCCCTCGATTGCGACGAGGAAGACTTGCGTGA
AGCGCAGACGGTGATTCGCCAGTGCAATCCGCATCCGGGCGCCGTGTTCGCCTCGGATGTGTCCGATTACGTGGTGCCCG
ATGTCGTCGTCAAGCGCGCGCGCAATGGCTGGCAAGTCACCCTGAACAACGACGTCATGCCGCGCCTGCGCGTCAATGCC
ATGTACGCCAACTTGCTCAAGCAGGGCAAGGGCGAGGGCGCCATGGGCGCGCAATTGCAGGAAGCCAAGTGGCTGATCAA
GAATATGCGCCAGCGTTTCGACACGATCCTGCGTGTGGCGCAGGCGATAGTAGAAAGACAAAAGAACTTTTTCTCGCATG
GGGCCGTTGCCATGCGCCCCCTTGTGCTCCGTGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATCTCGCGGGTA
ACAACCCAAAAGTACATGCTGACCCCGCATGGCATGTTTGAGTTGAAATATTTCTTTGGTAGCCACGTCGCCACCGAAGC
GGGGGGCGAAGCATCATCGACGGCGATACGGGCATTGATCGTGCAACTGACAGGAGCAGAAGACCCTAAAAATCCTTTAT
CCGACAGTAAGATTGCGGACATGCTGGGGGAACAAGGCATGGTGATTGCGCGACGTACTGTTGCCAAATACCGGGAAGCG
TTGAAAATTCCGCCAGTGAGCCTGCGTAAGTGTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-490)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290WR75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.913

100

0.624

Multiple sequence alignment