Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CN260_RS17430 Genome accession   NZ_CP023416
Coordinates   3407918..3408514 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain 1050     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3402918..3413514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CN260_RS17415 (CN260_17330) helD 3403126..3405180 (-) 2055 WP_025368292.1 DNA helicase IV -
  CN260_RS17420 (CN260_17335) - 3405305..3405751 (+) 447 WP_002898425.1 YccF domain-containing protein -
  CN260_RS17425 (CN260_17340) yccS 3405769..3407904 (+) 2136 WP_002898422.1 YccS family putative transporter -
  CN260_RS17430 (CN260_17345) sxy/tfoX 3407918..3408514 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  CN260_RS17440 (CN260_17355) sulA 3408863..3409372 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  CN260_RS17445 (CN260_17360) ompA 3409725..3410795 (+) 1071 WP_002898408.1 porin OmpA -
  CN260_RS17450 (CN260_17365) matP 3410927..3411379 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  CN260_RS17455 (CN260_17370) - 3411565..3413322 (+) 1758 WP_029602742.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=246947 CN260_RS17430 WP_004179217.1 3407918..3408514(-) (sxy/tfoX) [Klebsiella pneumoniae strain 1050]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=246947 CN260_RS17430 WP_004179217.1 3407918..3408514(-) (sxy/tfoX) [Klebsiella pneumoniae strain 1050]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGATGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment