Detailed information NTG0246932

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY75_RS05320
• Genome accession: NZ_CP028753
• Coordinates: 1116730..1117722 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A22
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1111730..1122722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY75_RS05290 (AOY75_05570)	ispD	1111791..1112501 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY75_RS05295 (AOY75_05575)	ispF	1112501..1112980 (+)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY75_RS05300 (AOY75_05580)	truD	1112977..1114026 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
AOY75_RS05305 (AOY75_05585)	surE	1114007..1114768 (+)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
AOY75_RS05310 (AOY75_05590)	pcm	1114762..1115388 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY75_RS05315 (AOY75_05595)	nlpD	1115573..1116667 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
AOY75_RS05320 (AOY75_05600)	rpoS	1116730..1117722 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY75_RS05325 (AOY75_05605)	-	1117893..1118444 (-)	552	WP_001179443.1	flavodoxin family protein	-
AOY75_RS05330 (AOY75_05610)	-	1118669..1119713 (+)	1045	Protein_1050	MBL fold metallo-hydrolase	-
AOY75_RS05335 (AOY75_05615)	ygbN	1119856..1121220 (-)	1365	WP_000104433.1	GntP family transporter	-
AOY75_RS05340 (AOY75_05620)	ygbM	1121309..1122085 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=246932 AOY75_RS05320 WP_000081550.1 1116730..1117722(+) (rpoS) [Escherichia coli strain A22]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=246932 AOY75_RS05320 WP_000081550.1 1116730..1117722(+) (rpoS) [Escherichia coli strain A22]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715