Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   AOY75_RS04115 Genome accession   NZ_CP028753
Coordinates   849922..851169 (-) Length   415 a.a.
NCBI ID   WP_001161838.1    Uniprot ID   -
Organism   Escherichia coli strain A22     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 844922..856169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY75_RS04095 (AOY75_04335) galE 845433..846449 (+) 1017 Protein_807 UDP-glucose 4-epimerase GalE -
  AOY75_RS04100 - 846534..847826 (+) 1293 WP_240727541.1 galactosyltransferase-related protein -
  AOY75_RS04105 - 847877..848815 (+) 939 WP_342345304.1 hypothetical protein -
  AOY75_RS04110 (AOY75_04345) - 848812..849441 (+) 630 WP_000657788.1 CatB-related O-acetyltransferase -
  AOY75_RS04115 (AOY75_04350) kpsS 849922..851169 (-) 1248 WP_001161838.1 capsular biosynthesis protein Regulator
  AOY75_RS04120 (AOY75_04355) - 851204..853231 (-) 2028 WP_033549759.1 capsular polysaccharide biosynthesis protein -
  AOY75_RS04125 (AOY75_04360) kdsB 853228..853968 (-) 741 WP_000030760.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AOY75_RS04130 (AOY75_04365) - 853978..855654 (-) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 49582.34 Da        Isoelectric Point: 10.1886

>NTDB_id=246928 AOY75_RS04115 WP_001161838.1 849922..851169(-) (kpsS) [Escherichia coli strain A22]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNWVYYGDVKKGLRWII
RTDFSYIKNNKIQSP

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=246928 AOY75_RS04115 WP_001161838.1 849922..851169(-) (kpsS) [Escherichia coli strain A22]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCCTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAGTTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGATTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACACAGGTTAATTGGGTTTATTATGGAGATGTAAAGAAAGGGTTAAGATGGATTATA
AGGACAGATTTTTCTTACATCAAAAATAATAAGATACAATCACCGTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.642

94.217

0.373