Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CMR26_RS19685 Genome accession   NZ_CP023414
Coordinates   3942016..3943401 (+) Length   461 a.a.
NCBI ID   WP_108725276.1    Uniprot ID   -
Organism   Bacillus velezensis strain BS-37     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3937016..3948401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMR26_RS19665 (CMR26_19680) - 3938162..3938809 (-) 648 WP_007614107.1 YigZ family protein -
  CMR26_RS19670 (CMR26_19685) degS 3939032..3940195 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  CMR26_RS19675 (CMR26_19690) degU 3940272..3940961 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CMR26_RS19680 (CMR26_19695) - 3941059..3941907 (+) 849 WP_007407483.1 DegV family protein -
  CMR26_RS19685 (CMR26_19700) comFA 3942016..3943401 (+) 1386 WP_108725276.1 DEAD/DEAH box helicase Machinery gene
  CMR26_RS19690 (CMR26_19705) - 3943459..3943743 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  CMR26_RS19695 (CMR26_19710) comFC 3943749..3944438 (+) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  CMR26_RS19700 (CMR26_19715) - 3944512..3944931 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  CMR26_RS19705 (CMR26_19720) flgM 3945001..3945267 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CMR26_RS19710 (CMR26_19725) - 3945282..3945764 (+) 483 WP_003151394.1 flagellar protein FlgN -
  CMR26_RS19715 (CMR26_19730) flgK 3945780..3947297 (+) 1518 WP_039063717.1 flagellar hook-associated protein FlgK -
  CMR26_RS19720 (CMR26_19735) flgL 3947309..3948226 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52770.17 Da        Isoelectric Point: 10.2458

>NTDB_id=246924 CMR26_RS19685 WP_108725276.1 3942016..3943401(+) (comFA) [Bacillus velezensis strain BS-37]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=246924 CMR26_RS19685 WP_108725276.1 3942016..3943401(+) (comFA) [Bacillus velezensis strain BS-37]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAAGCCCATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACCCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCAGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618

Multiple sequence alignment