Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CMR26_RS16900 Genome accession   NZ_CP023414
Coordinates   3399192..3400304 (-) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus velezensis strain BS-37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3394192..3405304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMR26_RS16885 (CMR26_16905) gyrA 3394281..3396740 (-) 2460 WP_015239009.1 DNA gyrase subunit A -
  CMR26_RS16890 (CMR26_16910) gyrB 3396956..3398872 (-) 1917 WP_011996153.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CMR26_RS16895 (CMR26_16915) remB 3398929..3399174 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  CMR26_RS16900 (CMR26_16920) recF 3399192..3400304 (-) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  CMR26_RS16905 (CMR26_16925) rlbA 3400320..3400535 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  CMR26_RS16910 (CMR26_16930) dnaN 3400670..3401806 (-) 1137 WP_014416704.1 DNA polymerase III subunit beta -
  CMR26_RS16915 (CMR26_16935) dnaA 3401991..3403331 (-) 1341 WP_007409908.1 chromosomal replication initiator protein DnaA -
  CMR26_RS16920 (CMR26_16940) rpmH 3403953..3404087 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  CMR26_RS16925 (CMR26_16945) rnpA 3404241..3404591 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=246913 CMR26_RS16900 WP_007409910.1 3399192..3400304(-) (recF) [Bacillus velezensis strain BS-37]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=246913 CMR26_RS16900 WP_007409910.1 3399192..3400304(-) (recF) [Bacillus velezensis strain BS-37]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGAAACGGGGAT
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCCCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTACCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943

Multiple sequence alignment