Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   CMR26_RS11500 Genome accession   NZ_CP023414
Coordinates   2351869..2352447 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain BS-37     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2346869..2357447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMR26_RS11470 (CMR26_11495) - 2348017..2348334 (+) 318 WP_003155166.1 YbjQ family protein -
  CMR26_RS11475 (CMR26_11500) - 2348367..2348636 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  CMR26_RS11480 (CMR26_11505) - 2348832..2349542 (+) 711 WP_007409183.1 YrpD family protein -
  CMR26_RS11485 (CMR26_11510) eis 2349699..2350910 (+) 1212 WP_108725062.1 enhanced intracellular survival protein Eis -
  CMR26_RS11490 (CMR26_11515) - 2350957..2351328 (-) 372 WP_042635035.1 iron chaperone -
  CMR26_RS11495 (CMR26_11520) - 2351355..2351723 (-) 369 WP_012117235.1 iron chaperone -
  CMR26_RS11500 (CMR26_11525) comK 2351869..2352447 (-) 579 WP_003155179.1 competence protein ComK Regulator
  CMR26_RS11505 (CMR26_11530) - 2352763..2352996 (+) 234 WP_007409189.1 IDEAL domain-containing protein -
  CMR26_RS11510 (CMR26_11535) - 2353026..2353883 (-) 858 WP_007610477.1 SDR family oxidoreductase -
  CMR26_RS11515 (CMR26_11540) - 2354008..2355531 (+) 1524 WP_108725063.1 FAD-dependent oxidoreductase -
  CMR26_RS20535 - 2355763..2356137 (+) 375 Protein_2252 protoglobin domain-containing protein -
  CMR26_RS20540 - 2356147..2356944 (+) 798 WP_371265894.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=246896 CMR26_RS11500 WP_003155179.1 2351869..2352447(-) (comK) [Bacillus velezensis strain BS-37]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=246896 CMR26_RS11500 WP_003155179.1 2351869..2352447(-) (comK) [Bacillus velezensis strain BS-37]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment