Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY76_RS16445 Genome accession   NZ_CP028752
Coordinates   3364186..3364791 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain A23     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3359186..3369791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY76_RS16425 (AOY76_17600) aes 3359327..3360286 (+) 960 WP_000801813.1 acetyl esterase -
  AOY76_RS16430 (AOY76_17605) hemH 3360283..3361245 (-) 963 WP_001250088.1 ferrochelatase -
  AOY76_RS16435 (AOY76_17610) adk 3361377..3362021 (-) 645 WP_001220233.1 adenylate kinase -
  AOY76_RS16440 (AOY76_17620) htpG 3362202..3364076 (-) 1875 WP_112032479.1 molecular chaperone HtpG -
  AOY76_RS16445 (AOY76_17625) recR 3364186..3364791 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AOY76_RS16450 (AOY76_17630) ybaB 3364791..3365120 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY76_RS16455 (AOY76_17635) dnaX 3365173..3367104 (-) 1932 WP_000122010.1 DNA polymerase III subunit gamma/tau -
  AOY76_RS16460 (AOY76_17640) apt 3367233..3367784 (-) 552 WP_112032478.1 adenine phosphoribosyltransferase -
  AOY76_RS16465 (AOY76_17650) ybaN 3367937..3368314 (-) 378 WP_001188905.1 DUF454 family protein -
  AOY76_RS16470 (AOY76_17655) priC 3368384..3368911 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  AOY76_RS16475 (AOY76_17660) rsmS 3368925..3369086 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY76_RS22130 - 3369139..3369237 (-) 99 Protein_3241 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=246883 AOY76_RS16445 WP_001195025.1 3364186..3364791(-) (recR) [Escherichia coli strain A23]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=246883 AOY76_RS16445 WP_001195025.1 3364186..3364791(-) (recR) [Escherichia coli strain A23]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment