Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CMR26_RS09530 Genome accession   NZ_CP023414
Coordinates   1994818..1995102 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain BS-37     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1989818..2000102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMR26_RS09510 (CMR26_09520) ade 1989925..1991658 (-) 1734 WP_032868161.1 adenine deaminase -
  CMR26_RS09515 (CMR26_09525) ktrC 1991806..1992471 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  CMR26_RS09520 (CMR26_09530) - 1992512..1993339 (-) 828 WP_108724996.1 gamma-glutamylcyclotransferase -
  CMR26_RS09525 (CMR26_09535) - 1993341..1994645 (-) 1305 WP_007409646.1 ATP-binding protein -
  CMR26_RS09530 (CMR26_09540) abrB 1994818..1995102 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CMR26_RS09540 (CMR26_09550) mreBH 1995373..1996380 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  CMR26_RS09545 (CMR26_09555) - 1996452..1996586 (+) 135 WP_003154559.1 protein YkpC -
  CMR26_RS09550 (CMR26_09560) - 1996687..1997919 (+) 1233 WP_039063007.1 aminopeptidase -
  CMR26_RS09555 (CMR26_09565) - 1997951..1998859 (-) 909 WP_039063006.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=246883 CMR26_RS09530 WP_003154557.1 1994818..1995102(-) (abrB) [Bacillus velezensis strain BS-37]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=246883 CMR26_RS09530 WP_003154557.1 1994818..1995102(-) (abrB) [Bacillus velezensis strain BS-37]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment