Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CMR26_RS05855 Genome accession   NZ_CP023414
Coordinates   1153304..1153912 (-) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain BS-37     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1148304..1158912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMR26_RS05835 (CMR26_05830) dnaD 1148537..1149235 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  CMR26_RS05840 (CMR26_05835) nth 1149254..1149913 (+) 660 WP_047935888.1 endonuclease III -
  CMR26_RS05845 (CMR26_05840) - 1149910..1150401 (+) 492 WP_020955982.1 YpoC family protein -
  CMR26_RS05850 (CMR26_05845) - 1150482..1153265 (-) 2784 WP_108724852.1 PBP1A family penicillin-binding protein -
  CMR26_RS05855 (CMR26_05850) recU 1153304..1153912 (-) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  CMR26_RS05860 (CMR26_05855) - 1153954..1154916 (+) 963 WP_108724853.1 DUF2515 domain-containing protein -
  CMR26_RS05865 (CMR26_05860) sspM 1154960..1155064 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  CMR26_RS05870 (CMR26_05865) - 1155270..1155515 (+) 246 WP_014418233.1 DUF5446 family protein -
  CMR26_RS05875 (CMR26_05870) - 1155561..1155929 (+) 369 WP_042635291.1 YppE family protein -
  CMR26_RS05880 (CMR26_05875) - 1155968..1156150 (-) 183 WP_003153532.1 YppF family protein -
  CMR26_RS05885 (CMR26_05880) - 1156337..1156870 (+) 534 WP_108724854.1 YppG family protein -
  CMR26_RS05890 (CMR26_05885) - 1156900..1157313 (-) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  CMR26_RS05895 (CMR26_05890) - 1157452..1157958 (+) 507 WP_007409495.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=246877 CMR26_RS05855 WP_012117837.1 1153304..1153912(-) (recU) [Bacillus velezensis strain BS-37]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=246877 CMR26_RS05855 WP_012117837.1 1153304..1153912(-) (recU) [Bacillus velezensis strain BS-37]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment