Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AOY76_RS08860 Genome accession   NZ_CP028752
Coordinates   1858602..1860029 (-) Length   475 a.a.
NCBI ID   WP_112032547.1    Uniprot ID   -
Organism   Escherichia coli strain A23     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1853602..1865029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY76_RS08830 (AOY76_09460) yeeZ 1853657..1854481 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  AOY76_RS08835 (AOY76_09465) yeeY 1854527..1855456 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AOY76_RS08840 (AOY76_09470) yoeI 1855671..1855733 (+) 63 WP_010723108.1 membrane protein YoeI -
  AOY76_RS08845 (AOY76_09475) plaP 1855723..1857081 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AOY76_RS08850 (AOY76_09480) tsuA 1857260..1858318 (+) 1059 WP_112032548.1 thiosulfate utilization transporter TsuA/YeeE -
  AOY76_RS08855 (AOY76_09485) tsuB 1858332..1858559 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AOY76_RS08860 (AOY76_09490) sbcB 1858602..1860029 (-) 1428 WP_112032547.1 exodeoxyribonuclease I Machinery gene
  AOY76_RS08865 (AOY76_09495) dacD 1860238..1861404 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AOY76_RS08870 (AOY76_09500) sbmC 1861523..1861996 (+) 474 WP_001105383.1 DNA gyrase inhibitor SbmC -
  AOY76_RS08875 (AOY76_09505) yeeA 1862194..1863252 (+) 1059 WP_001200891.1 FUSC family protein -
  AOY76_RS08880 (AOY76_09510) tmaR 1863424..1863753 (+) 330 WP_000450409.1 DUF496 family protein -
  AOY76_RS08885 (AOY76_09515) - 1863854..1864297 (-) 444 WP_001189432.1 EutP/PduV family microcompartment system protein -
  AOY76_RS08890 (AOY76_09520) pduU 1864302..1864652 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54471.78 Da        Isoelectric Point: 5.6070

>NTDB_id=246865 AOY76_RS08860 WP_112032547.1 1858602..1860029(-) (sbcB) [Escherichia coli strain A23]
MMTDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=246865 AOY76_RS08860 WP_112032547.1 1858602..1860029(-) (sbcB) [Escherichia coli strain A23]
ATGATGACTGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579