Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CMR26_RS03475 Genome accession   NZ_CP023414
Coordinates   672855..673607 (+) Length   250 a.a.
NCBI ID   WP_007408162.1    Uniprot ID   -
Organism   Bacillus velezensis strain BS-37     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 667855..678607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMR26_RS03460 (CMR26_03455) - 668077..668268 (-) 192 WP_003152639.1 hypothetical protein -
  CMR26_RS03465 (CMR26_03460) - 668721..671363 (+) 2643 WP_047935994.1 valine--tRNA ligase -
  CMR26_RS03470 (CMR26_03465) - 671422..672714 (+) 1293 WP_047935993.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  CMR26_RS03475 (CMR26_03470) comC 672855..673607 (+) 753 WP_007408162.1 prepilin peptidase Machinery gene
  CMR26_RS03480 (CMR26_03475) - 673734..674735 (+) 1002 WP_039254352.1 SPOR domain-containing protein -
  CMR26_RS03485 (CMR26_03480) - 674876..675445 (+) 570 WP_007408164.1 Maf family protein -
  CMR26_RS03490 (CMR26_03485) radC 675477..676172 (+) 696 WP_007408165.1 RadC family protein -
  CMR26_RS03495 (CMR26_03490) mreB 676264..677277 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  CMR26_RS03500 (CMR26_03495) mreC 677308..678171 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27187.88 Da        Isoelectric Point: 9.4293

>NTDB_id=246860 CMR26_RS03475 WP_007408162.1 672855..673607(+) (comC) [Bacillus velezensis strain BS-37]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=246860 CMR26_RS03475 WP_007408162.1 672855..673607(+) (comC) [Bacillus velezensis strain BS-37]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
TTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCTTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment