Detailed information NTG0246852

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY76_RS05065
• Genome accession: NZ_CP028752
• Coordinates: 1053596..1054588 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A23
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1048596..1059588

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY76_RS05035 (AOY76_05425)	ispD	1048657..1049367 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY76_RS05040 (AOY76_05430)	ispF	1049367..1049846 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY76_RS05045 (AOY76_05435)	truD	1049843..1050892 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
AOY76_RS05050 (AOY76_05440)	surE	1050873..1051634 (+)	762	WP_240770867.1	5'/3'-nucleotidase SurE	-
AOY76_RS05055 (AOY76_05445)	pcm	1051628..1052254 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY76_RS05060 (AOY76_05450)	nlpD	1052439..1053533 (+)	1095	WP_309299899.1	murein hydrolase activator NlpD	-
AOY76_RS05065 (AOY76_05455)	rpoS	1053596..1054588 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY76_RS05070 (AOY76_05460)	ygbN	1054682..1056046 (-)	1365	WP_000104459.1	GntP family transporter	-
AOY76_RS05075 (AOY76_05465)	ygbM	1056135..1056911 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
AOY76_RS05080 (AOY76_05470)	ygbL	1056916..1057554 (-)	639	WP_001278994.1	aldolase	-
AOY76_RS05085 (AOY76_05475)	otnK	1057551..1058812 (-)	1262	Protein_1007	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=246852 AOY76_RS05065 WP_000081550.1 1053596..1054588(+) (rpoS) [Escherichia coli strain A23]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=246852 AOY76_RS05065 WP_000081550.1 1053596..1054588(+) (rpoS) [Escherichia coli strain A23]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715