Detailed information NTG0246804

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY77_RS18835
• Genome accession: NZ_CP028751
• Coordinates: 3893393..3894385 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A24
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3888393..3899385

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY77_RS18815 (AOY77_20055)	ygbM	3889024..3889800 (+)	777	WP_001136928.1	HPr family phosphocarrier protein	-
AOY77_RS18820 (AOY77_20060)	ygbN	3889889..3891253 (+)	1365	WP_000104433.1	GntP family transporter	-
AOY77_RS18825 (AOY77_20065)	-	3891396..3892439 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
AOY77_RS18830 (AOY77_20070)	-	3892664..3893215 (+)	552	WP_001179442.1	flavodoxin family protein	-
AOY77_RS18835 (AOY77_20075)	rpoS	3893393..3894385 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY77_RS18840 (AOY77_20080)	nlpD	3894448..3895542 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AOY77_RS18845 (AOY77_20085)	pcm	3895727..3896353 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
AOY77_RS18850 (AOY77_20090)	surE	3896347..3897108 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY77_RS18855 (AOY77_20095)	truD	3897089..3898138 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
AOY77_RS18860 (AOY77_20100)	ispF	3898135..3898614 (-)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY77_RS18865 (AOY77_20105)	ispD	3898614..3899324 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=246804 AOY77_RS18835 WP_000081550.1 3893393..3894385(-) (rpoS) [Escherichia coli strain A24]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=246804 AOY77_RS18835 WP_000081550.1 3893393..3894385(-) (rpoS) [Escherichia coli strain A24]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715