Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   Bateq7PJ16_RS12575 Genome accession   NZ_CP023409
Coordinates   2335102..2335722 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2330102..2340722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS12535 (Bateq7PJ16_2476) ptsA 2331233..2331739 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  Bateq7PJ16_RS12540 (Bateq7PJ16_2477) ypqA 2331877..2332296 (+) 420 WP_038828605.1 Hsp20/alpha crystallin family protein -
  Bateq7PJ16_RS12545 (Bateq7PJ16_2478) sppG 2332317..2332694 (-) 378 WP_015251832.1 YppG family protein -
  Bateq7PJ16_RS12550 (Bateq7PJ16_2479) yppF 2332882..2333070 (+) 189 WP_003230690.1 YppF family protein -
  Bateq7PJ16_RS12555 (Bateq7PJ16_2480) yppE 2333109..2333480 (-) 372 WP_021481525.1 YppE family protein -
  Bateq7PJ16_RS12560 (Bateq7PJ16_2481) yppD 2333526..2333771 (-) 246 WP_021481526.1 DUF5446 family protein -
  Bateq7PJ16_RS12565 (Bateq7PJ16_2482) sspM 2333970..2334074 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  Bateq7PJ16_RS12570 (Bateq7PJ16_2483) yppC 2334099..2335061 (-) 963 WP_021481527.1 DUF2515 domain-containing protein -
  Bateq7PJ16_RS12575 (Bateq7PJ16_2484) recU 2335102..2335722 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  Bateq7PJ16_RS12580 (Bateq7PJ16_2485) ponA 2335744..2338497 (+) 2754 WP_120028310.1 PBP1A family penicillin-binding protein -
  Bateq7PJ16_RS12585 (Bateq7PJ16_2486) ypoC 2338573..2339067 (-) 495 WP_120028311.1 YpoC family protein -
  Bateq7PJ16_RS12590 (Bateq7PJ16_2487) nth 2339064..2339723 (-) 660 WP_009967580.1 endonuclease III -
  Bateq7PJ16_RS12595 (Bateq7PJ16_2488) dnaD 2339742..2340440 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=246791 Bateq7PJ16_RS12575 WP_004399067.1 2335102..2335722(+) (recU) [Bacillus subtilis strain 7PJ-16]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=246791 Bateq7PJ16_RS12575 WP_004399067.1 2335102..2335722(+) (recU) [Bacillus subtilis strain 7PJ-16]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment