Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY77_RS07395 Genome accession   NZ_CP028751
Coordinates   1529071..1529676 (+) Length   201 a.a.
NCBI ID   WP_001195024.1    Uniprot ID   -
Organism   Escherichia coli strain A24     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1524071..1534676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY77_RS24755 - 1524625..1524723 (+) 99 Protein_1428 hypothetical protein -
  AOY77_RS07365 (AOY77_07855) rsmS 1524776..1524937 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY77_RS07370 (AOY77_07860) priC 1524951..1525478 (-) 528 WP_000844854.1 primosomal replication protein N'' -
  AOY77_RS07375 (AOY77_07865) ybaN 1525548..1525925 (+) 378 WP_001188900.1 DUF454 family protein -
  AOY77_RS07380 (AOY77_07875) apt 1526078..1526629 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY77_RS07385 (AOY77_07880) dnaX 1526758..1528689 (+) 1932 WP_000122025.1 DNA polymerase III subunit gamma/tau -
  AOY77_RS07390 (AOY77_07885) ybaB 1528742..1529071 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY77_RS07395 (AOY77_07890) recR 1529071..1529676 (+) 606 WP_001195024.1 recombination mediator RecR Machinery gene
  AOY77_RS07400 (AOY77_07895) htpG 1529786..1531660 (+) 1875 WP_201472068.1 molecular chaperone HtpG -
  AOY77_RS07405 (AOY77_07905) adk 1531841..1532485 (+) 645 WP_001313630.1 adenylate kinase -
  AOY77_RS07410 (AOY77_07910) hemH 1532617..1533579 (+) 963 WP_001250114.1 ferrochelatase -
  AOY77_RS07415 (AOY77_07915) aes 1533554..1534522 (-) 969 WP_000801820.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.04 Da        Isoelectric Point: 5.0822

>NTDB_id=246773 AOY77_RS07395 WP_001195024.1 1529071..1529676(+) (recR) [Escherichia coli strain A24]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRKEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=246773 AOY77_RS07395 WP_001195024.1 1529071..1529676(+) (recR) [Escherichia coli strain A24]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTAAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment