Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   Bateq7PJ16_RS06035 Genome accession   NZ_CP023409
Coordinates   1163884..1164462 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain 7PJ-16     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1158884..1169462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS06015 (Bateq7PJ16_1158) hemAT 1159395..1160693 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  Bateq7PJ16_RS06020 (Bateq7PJ16_1159) comW 1160832..1162361 (-) 1530 WP_049140685.1 FAD-dependent oxidoreductase -
  Bateq7PJ16_RS06025 (Bateq7PJ16_1160) yhxC 1162473..1163330 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  Bateq7PJ16_RS06030 (Bateq7PJ16_1161) yhzC 1163358..1163591 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  Bateq7PJ16_RS06035 (Bateq7PJ16_1162) comK 1163884..1164462 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  Bateq7PJ16_RS06040 (Bateq7PJ16_1163) yhxD 1164507..1165406 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  Bateq7PJ16_RS06045 (Bateq7PJ16_1165) yhjA 1165623..1165892 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  Bateq7PJ16_RS06050 (Bateq7PJ16_1166) yhjB 1165935..1167404 (-) 1470 WP_032725349.1 sodium:solute symporter -
  Bateq7PJ16_RS06055 (Bateq7PJ16_1167) yhjC 1167401..1167601 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  Bateq7PJ16_RS06060 (Bateq7PJ16_1168) - 1167800..1168171 (-) 372 WP_014476361.1 hypothetical protein -
  Bateq7PJ16_RS06065 (Bateq7PJ16_1169) yhjE 1168323..1168946 (+) 624 WP_010886465.1 VTT domain-containing protein -
  Bateq7PJ16_RS06070 (Bateq7PJ16_1170) lepB 1168948..1169454 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=246772 Bateq7PJ16_RS06035 WP_003245329.1 1163884..1164462(+) (comK) [Bacillus subtilis strain 7PJ-16]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=246772 Bateq7PJ16_RS06035 WP_003245329.1 1163884..1164462(+) (comK) [Bacillus subtilis strain 7PJ-16]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCACGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment