Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   Bateq7PJ16_RS00030 Genome accession   NZ_CP023409
Coordinates   4027..5139 (+) Length   370 a.a.
NCBI ID   WP_159376581.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..10139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS00010 rpmH 239..373 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  Bateq7PJ16_RS00015 (Bateq7PJ16_0001) dnaA 1000..2340 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  Bateq7PJ16_RS00020 (Bateq7PJ16_0002) dnaN 2529..3665 (+) 1137 WP_003242509.1 DNA polymerase III subunit beta -
  Bateq7PJ16_RS00025 (Bateq7PJ16_0003) rlbA 3796..4011 (+) 216 WP_003226810.1 ribosome maturation protein RlbA -
  Bateq7PJ16_RS00030 (Bateq7PJ16_0004) recF 4027..5139 (+) 1113 WP_159376581.1 DNA replication/repair protein RecF Machinery gene
  Bateq7PJ16_RS00035 (Bateq7PJ16_0005) remB 5157..5402 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  Bateq7PJ16_RS00040 (Bateq7PJ16_0006) gyrB 5457..7373 (+) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  Bateq7PJ16_RS00045 (Bateq7PJ16_0008) gyrA 7584..10049 (+) 2466 WP_003244540.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42289.37 Da        Isoelectric Point: 7.3660

>NTDB_id=246755 Bateq7PJ16_RS00030 WP_159376581.1 4027..5139(+) (recF) [Bacillus subtilis strain 7PJ-16]
MYILNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=246755 Bateq7PJ16_RS00030 WP_159376581.1 4027..5139(+) (recF) [Bacillus subtilis strain 7PJ-16]
TTGTATATCCTGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGATGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACGATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.73

100

0.997

Multiple sequence alignment