Detailed information NTG0246719

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY78_RS17250
• Genome accession: NZ_CP028750
• Coordinates: 3521422..3522414 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A25
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3516422..3527414

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY78_RS17230 (AOY78_18295)	ygbM	3517057..3517833 (+)	777	WP_096891130.1	HPr family phosphocarrier protein	-
AOY78_RS17235 (AOY78_18300)	ygbN	3517922..3519286 (+)	1365	WP_000104433.1	GntP family transporter	-
AOY78_RS17240 (AOY78_18305)	-	3519429..3520471 (-)	1043	Protein_3365	MBL fold metallo-hydrolase	-
AOY78_RS17245 (AOY78_18315)	-	3520696..3521247 (+)	552	WP_001179443.1	flavodoxin family protein	-
AOY78_RS17250 (AOY78_18320)	rpoS	3521422..3522414 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY78_RS17255 (AOY78_18325)	nlpD	3522477..3523571 (-)	1095	WP_309243471.1	murein hydrolase activator NlpD	-
AOY78_RS17260 (AOY78_18330)	pcm	3523756..3524382 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY78_RS17265 (AOY78_18335)	surE	3524376..3525137 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY78_RS17270 (AOY78_18340)	truD	3525118..3526167 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
AOY78_RS17275 (AOY78_18345)	ispF	3526164..3526643 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY78_RS17280 (AOY78_18350)	ispD	3526643..3527353 (-)	711	WP_000246134.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=246719 AOY78_RS17250 WP_000081550.1 3521422..3522414(-) (rpoS) [Escherichia coli strain A25]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=246719 AOY78_RS17250 WP_000081550.1 3521422..3522414(-) (rpoS) [Escherichia coli strain A25]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715