Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY79_RS16640 Genome accession   NZ_CP028749
Coordinates   3409237..3409842 (-) Length   201 a.a.
NCBI ID   WP_240751193.1    Uniprot ID   -
Organism   Escherichia coli strain A26     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3404237..3414842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY79_RS16620 (AOY79_17600) aes 3404378..3405337 (+) 960 WP_000801822.1 acetyl esterase -
  AOY79_RS16625 (AOY79_17605) hemH 3405334..3406296 (-) 963 WP_001250115.1 ferrochelatase -
  AOY79_RS16630 (AOY79_17610) adk 3406428..3407072 (-) 645 WP_001313630.1 adenylate kinase -
  AOY79_RS16635 (AOY79_17620) htpG 3407253..3409127 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  AOY79_RS16640 (AOY79_17625) recR 3409237..3409842 (-) 606 WP_240751193.1 recombination mediator RecR Machinery gene
  AOY79_RS16645 (AOY79_17630) ybaB 3409842..3410171 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY79_RS16650 (AOY79_17635) dnaX 3410224..3412155 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  AOY79_RS16655 (AOY79_17640) apt 3412284..3412835 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY79_RS16660 (AOY79_17650) ybaN 3412988..3413365 (-) 378 WP_001188900.1 DUF454 family protein -
  AOY79_RS16665 (AOY79_17655) priC 3413435..3413962 (+) 528 WP_024223151.1 primosomal replication protein N'' -
  AOY79_RS16670 (AOY79_17660) rsmS 3413976..3414137 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY79_RS22970 - 3414190..3414288 (-) 99 Protein_3269 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21991.10 Da        Isoelectric Point: 5.0822

>NTDB_id=246632 AOY79_RS16640 WP_240751193.1 3409237..3409842(-) (recR) [Escherichia coli strain A26]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRKEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLVGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=246632 AOY79_RS16640 WP_240751193.1 3409237..3409842(-) (recR) [Escherichia coli strain A26]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTAAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGTCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443