Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CMV25_RS08275 Genome accession   NZ_CP023392
Coordinates   1670948..1671664 (-) Length   238 a.a.
NCBI ID   WP_096040174.1    Uniprot ID   A0A290Q043
Organism   Lactococcus raffinolactis strain WiKim0068     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1665948..1676664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV25_RS08260 (CMV25_08260) - 1666725..1667684 (+) 960 WP_096040173.1 YbbR-like domain-containing protein -
  CMV25_RS08265 (CMV25_08265) glmM 1667758..1669113 (+) 1356 WP_061774956.1 phosphoglucosamine mutase -
  CMV25_RS08270 (CMV25_08270) - 1669243..1670571 (-) 1329 WP_061774955.1 H2O-forming NADH oxidase -
  CMV25_RS08275 (CMV25_08275) treR 1670948..1671664 (-) 717 WP_096040174.1 trehalose operon repressor Regulator
  CMV25_RS08280 (CMV25_08280) - 1671774..1672646 (+) 873 WP_096040175.1 Cof-type HAD-IIB family hydrolase -
  CMV25_RS08285 (CMV25_08285) - 1672791..1673780 (+) 990 WP_096040176.1 LacI family DNA-binding transcriptional regulator -
  CMV25_RS08290 (CMV25_08290) - 1674331..1675827 (+) 1497 WP_096040177.1 ABC transporter substrate-binding protein -
  CMV25_RS11595 - 1675960..1676277 (+) 318 WP_208616166.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27771.91 Da        Isoelectric Point: 7.4144

>NTDB_id=246617 CMV25_RS08275 WP_096040174.1 1670948..1671664(-) (treR) [Lactococcus raffinolactis strain WiKim0068]
MKKYEIILHDLEYKIKNKTYQENDLLPSENELVKIYDASRATIRQALKILEEKGLIQKQKGRGSVVIASSKLNFPISGLT
SYKELQNSLGFESVTEVIKFDKITVDSELAAKTLFEIGIPVWRIIRVRKIDGEAVVLDHDFVKYDICPNMTKTDVAYSLY
DYLEKQLKIEISFAQKEITIDFVNDEDRQLLDLNLLDRHIVSVKSHVFLNDASVFQYTDSRHQVDKFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=246617 CMV25_RS08275 WP_096040174.1 1670948..1671664(-) (treR) [Lactococcus raffinolactis strain WiKim0068]
ATGAAAAAATATGAAATAATTTTACACGATTTGGAATACAAAATAAAAAATAAGACTTATCAGGAAAACGATCTCCTGCC
TAGTGAAAATGAATTGGTCAAAATCTACGACGCCAGTAGAGCAACGATTCGCCAAGCGCTGAAAATTTTGGAAGAAAAGG
GGTTAATTCAGAAACAAAAAGGGCGAGGCTCTGTGGTTATTGCTTCTAGCAAACTTAATTTTCCGATTTCTGGCTTAACC
AGCTACAAGGAACTACAAAATTCACTCGGATTTGAAAGTGTCACTGAAGTCATCAAATTTGACAAAATCACAGTTGACAG
TGAACTTGCTGCAAAAACACTTTTTGAAATCGGAATCCCTGTGTGGCGTATCATACGCGTTCGTAAGATTGACGGTGAAG
CCGTCGTGCTTGATCATGACTTCGTCAAATATGATATTTGTCCCAATATGACCAAAACAGATGTCGCTTATTCACTCTAC
GACTACCTTGAAAAACAGCTGAAAATTGAGATTTCCTTCGCTCAGAAAGAAATTACCATTGATTTCGTTAATGACGAAGA
TCGGCAACTCTTGGACCTGAATCTCTTGGACCGCCATATCGTCAGTGTCAAAAGCCATGTTTTTCTCAATGATGCAAGCG
TCTTTCAATACACGGATAGTCGACATCAAGTTGATAAATTCCGGTTCACTGAATTTGCCAGACGGCAAAAACGTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290Q043

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

48.945

99.58

0.487

Multiple sequence alignment